Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PPM66_RS05470 Genome accession   NZ_CP116867
Coordinates   1055439..1056392 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050439..1061392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS05445 argF 1052271..1053230 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  PPM66_RS05450 yjzC 1053316..1053495 (+) 180 WP_003245356.1 YjzC family protein -
  PPM66_RS05455 yjzD 1053541..1053726 (-) 186 WP_003245236.1 YjzD family protein -
  PPM66_RS05460 - 1053975..1054709 (+) 735 WP_003245223.1 hypothetical protein -
  PPM66_RS05465 - 1054791..1055348 (+) 558 WP_003232974.1 hypothetical protein -
  PPM66_RS05470 med 1055439..1056392 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  PPM66_RS05475 comZ 1056407..1056598 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  PPM66_RS05480 yjzB 1056628..1056867 (-) 240 WP_003232972.1 spore coat protein YjzB -
  PPM66_RS05485 fabH 1057032..1057970 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  PPM66_RS05490 fabF 1057993..1059234 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  PPM66_RS05495 yjaZ 1059310..1060095 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  PPM66_RS05500 appD 1060287..1061273 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=780443 PPM66_RS05470 WP_003245494.1 1055439..1056392(+) (med) [Bacillus subtilis subsp. subtilis strain MGP008]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=780443 PPM66_RS05470 WP_003245494.1 1055439..1056392(+) (med) [Bacillus subtilis subsp. subtilis strain MGP008]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1