Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PPM66_RS05015 Genome accession   NZ_CP116867
Coordinates   965925..966503 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 960925..971503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS19320 - 961436..961951 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  PPM66_RS19325 - 962240..962818 (-) 579 Protein_915 protoglobin domain-containing protein -
  PPM66_RS05000 comW 962873..964402 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  PPM66_RS05005 yhxC 964514..965371 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  PPM66_RS05010 yhzC 965399..965632 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  PPM66_RS05015 comK 965925..966503 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  PPM66_RS05020 yhxD 966550..967449 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  PPM66_RS05025 yhjA 967666..967935 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  PPM66_RS05030 yhjB 967978..969447 (-) 1470 WP_003233134.1 sodium:solute symporter family protein -
  PPM66_RS05035 yhjC 969444..969644 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PPM66_RS05040 - 969852..970214 (-) 363 WP_003233132.1 hypothetical protein -
  PPM66_RS05045 yhjE 970366..970989 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  PPM66_RS05050 lepB 970991..971497 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=780440 PPM66_RS05015 WP_003245329.1 965925..966503(+) (comK) [Bacillus subtilis subsp. subtilis strain MGP008]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=780440 PPM66_RS05015 WP_003245329.1 965925..966503(+) (comK) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1