Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PN942_RS12335 Genome accession   NZ_CP116807
Coordinates   2463313..2464281 (+) Length   322 a.a.
NCBI ID   WP_017000362.1    Uniprot ID   A0AAX3W5Q2
Organism   Mammaliicoccus lentus strain PVZ.22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2458313..2469281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN942_RS12315 (PN942_12310) nrdI 2459041..2459430 (+) 390 WP_017000366.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PN942_RS12320 (PN942_12315) nrdE 2459402..2461507 (+) 2106 WP_231051157.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PN942_RS12325 (PN942_12320) nrdF 2461535..2462506 (+) 972 WP_064204699.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PN942_RS12330 (PN942_12325) - 2462760..2463188 (+) 429 WP_282460966.1 FixH family protein -
  PN942_RS12335 (PN942_12330) ceuB 2463313..2464281 (+) 969 WP_017000362.1 ABC transporter permease Machinery gene
  PN942_RS12340 (PN942_12335) - 2464274..2465239 (+) 966 WP_017000361.1 iron chelate uptake ABC transporter family permease subunit -
  PN942_RS12345 (PN942_12340) - 2465236..2466036 (+) 801 WP_231051159.1 ATP-binding cassette domain-containing protein -
  PN942_RS12350 (PN942_12345) - 2466140..2467180 (+) 1041 WP_070045680.1 ABC transporter substrate-binding protein -
  PN942_RS12355 (PN942_12350) murB 2467344..2468273 (-) 930 WP_064210869.1 UDP-N-acetylmuramate dehydrogenase -
  PN942_RS12360 (PN942_12355) - 2468344..2468865 (-) 522 WP_070045685.1 GrpB family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35426.02 Da        Isoelectric Point: 10.4592

>NTDB_id=780375 PN942_RS12335 WP_017000362.1 2463313..2464281(+) (ceuB) [Mammaliicoccus lentus strain PVZ.22]
MGKFLMRLDVLIVLLVIATFFSIFIGVSEVRPLQILSLTDEQKNILVSSRIPRTVSIIISGSCLAICGLIMQQLTRNKFV
SPTTAGTMDWAKLGVLISLILFPDTNILFKLLFATLLSLFGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSTFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLIIAYIFANKFTIAGMGKDFSVNLGLNYHRIVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISIFRGDHLKNALPHTAILGALFVMICDILGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSK
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=780375 PN942_RS12335 WP_017000362.1 2463313..2464281(+) (ceuB) [Mammaliicoccus lentus strain PVZ.22]
ATGGGAAAGTTTTTAATGCGTTTAGATGTATTGATTGTATTATTAGTTATCGCAACATTCTTCTCAATATTTATTGGTGT
TTCAGAAGTGAGACCTTTACAAATATTAAGTCTTACAGATGAACAGAAAAATATACTAGTATCTAGTAGAATTCCTAGAA
CGGTTAGTATTATTATTTCAGGAAGTTGTTTAGCAATATGCGGTCTGATTATGCAACAGTTAACGAGAAATAAATTTGTT
TCTCCAACAACAGCAGGCACGATGGATTGGGCAAAGTTAGGTGTTTTAATTTCACTGATACTATTTCCAGACACGAATAT
ATTATTTAAACTTTTATTCGCAACATTACTAAGTTTATTTGGAACAATGTTATTCATGCAAATCCTACAAAGAATTCAAT
TCAAAGATGTTATTTTTATACCACTTGTAGGGATAATGCTTGGTAACATTGTTTCTAGTTTTTCAACCTTTGTTGCTTTA
AGAACAAACGCTGTTCAAAGCATAGGGAACTTTATGCAAGGTAACTTTTCTATCATTACTAGTGGGCGATACGAAATTTT
ATACATAAGTATTCCTTTATTGATAATTGCGTATATTTTTGCCAACAAATTTACGATTGCAGGTATGGGAAAGGACTTCA
GTGTCAACTTAGGATTAAATTACCATAGAATAGTTAATATTGGTTTAATCATTGCATCTATCATTACAGCACTAGTTGTG
GTAACAGTAGGAATGATGCCTTTCTTAGGGTTAATTATACCGAACTTAATTTCAATATTCAGAGGTGATCATCTTAAAAA
TGCTTTACCGCACACTGCAATCTTAGGCGCGTTGTTTGTTATGATATGCGACATTTTAGGAAGACTGATTATATTCCCAT
ACGAAATTACAATTGGTTTAACAATCGGTGTAATTGGTAGCTTTATTTTCATAGTTTTATTGATGAAAGGACGTTCGAAA
AATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.473

98.447

0.497