Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PPK73_RS17805 Genome accession   NZ_CP116801
Coordinates   3710590..3712011 (+) Length   473 a.a.
NCBI ID   WP_031964799.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 37662RM2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3705590..3717011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK73_RS17785 (PPK73_17785) thrC 3705845..3706984 (+) 1140 WP_000063593.1 threonine synthase -
  PPK73_RS17790 (PPK73_17790) pbpG 3707092..3708138 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  PPK73_RS17795 (PPK73_17795) - 3708351..3708986 (+) 636 WP_000633799.1 response regulator -
  PPK73_RS17800 (PPK73_17800) pilS 3708997..3710565 (+) 1569 WP_001160343.1 ATP-binding protein Regulator
  PPK73_RS17805 (PPK73_17805) pilR 3710590..3712011 (+) 1422 WP_031964799.1 sigma-54 dependent transcriptional regulator Regulator
  PPK73_RS17810 (PPK73_17810) - 3712015..3713199 (-) 1185 WP_000939107.1 S41 family peptidase -
  PPK73_RS17815 (PPK73_17815) gpmI 3713215..3714762 (-) 1548 WP_000128747.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  PPK73_RS17820 (PPK73_17820) lptG 3714888..3715958 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52963.14 Da        Isoelectric Point: 6.6690

>NTDB_id=780282 PPK73_RS17805 WP_031964799.1 3710590..3712011(+) (pilR) [Acinetobacter baumannii strain 37662RM2]
MAEPQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=780282 PPK73_RS17805 WP_031964799.1 3710590..3712011(+) (pilR) [Acinetobacter baumannii strain 37662RM2]
ATGGCAGAACCGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTGCCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGTGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAGCAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTAATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTG
CTTGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCACTAAGAGCGAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACTTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.732

100

0.987
  pilR Pseudomonas aeruginosa PAK

50.98

97.04

0.495