Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   QYT31_RS00710 Genome accession   NZ_CP129558
Coordinates   151116..152267 (+) Length   383 a.a.
NCBI ID   WP_000020360.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 670M     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 146116..157267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT31_RS00685 (QYT31_00680) yfmH 146945..148231 (+) 1287 WP_000664769.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  QYT31_RS00690 (QYT31_00685) ymfI 148231..148935 (+) 705 WP_000646237.1 elongation factor P 5-aminopentanone reductase -
  QYT31_RS00695 (QYT31_00690) - 149040..149867 (+) 828 WP_416471186.1 YmfK family protein -
  QYT31_RS00700 (QYT31_00695) - 149886..150278 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  QYT31_RS00705 (QYT31_00700) pgsA 150312..150890 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYT31_RS00710 (QYT31_00705) cinA 151116..152267 (+) 1152 WP_000020360.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  QYT31_RS00715 (QYT31_00710) recA 152432..153475 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  QYT31_RS00720 (QYT31_00715) rny 153829..155388 (+) 1560 WP_001050913.1 ribonuclease Y -
  QYT31_RS00725 (QYT31_00720) - 155685..155900 (-) 216 WP_000026308.1 hypothetical protein -
  QYT31_RS00730 (QYT31_00725) - 156074..156871 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43211.48 Da        Isoelectric Point: 5.9365

>NTDB_id=780279 QYT31_RS00710 WP_000020360.1 151116..152267(+) (cinA) [Staphylococcus aureus strain 670M]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINDNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=780279 QYT31_RS00710 WP_000020360.1 151116..152267(+) (cinA) [Staphylococcus aureus strain 670M]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACGATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431