Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PKO50_RS21465 Genome accession   NZ_CP116775
Coordinates   4713063..4713698 (-) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas sp. 273     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4708063..4718698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKO50_RS21435 murB 4709150..4710169 (-) 1020 WP_275627178.1 UDP-N-acetylmuramate dehydrogenase -
  PKO50_RS21440 - 4710166..4710627 (-) 462 WP_275627179.1 low molecular weight protein-tyrosine-phosphatase -
  PKO50_RS21445 kdsB 4710627..4711391 (-) 765 WP_109934033.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PKO50_RS21450 - 4711397..4711582 (-) 186 WP_009621404.1 Trm112 family protein -
  PKO50_RS21455 lpxK 4711622..4712620 (-) 999 WP_275627180.1 tetraacyldisaccharide 4'-kinase -
  PKO50_RS21460 - 4712620..4713066 (-) 447 WP_275627181.1 biopolymer transporter ExbD -
  PKO50_RS21465 exbB 4713063..4713698 (-) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PKO50_RS21470 - 4713771..4715989 (-) 2219 Protein_4256 DNA internalization-related competence protein ComEC/Rec2 -
  PKO50_RS21475 - 4716113..4716643 (+) 531 WP_089392606.1 DUF2062 domain-containing protein -
  PKO50_RS21480 - 4717096..4718346 (-) 1251 WP_275627182.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=780223 PKO50_RS21465 WP_009621398.1 4713063..4713698(-) (exbB) [Pseudomonas sp. 273]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=780223 PKO50_RS21465 WP_009621398.1 4713063..4713698(-) (exbB) [Pseudomonas sp. 273]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGTTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAACTCAAGGCGTCTTCCCCGCTGGGTGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAAGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAATGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCTTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAACTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806