Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PNF30_RS19275 Genome accession   NZ_CP116774
Coordinates   3767211..3768323 (-) Length   370 a.a.
NCBI ID   WP_061406450.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3762211..3773323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS19260 (PNF30_19260) gyrA 3762237..3764741 (-) 2505 WP_095410045.1 DNA gyrase subunit A -
  PNF30_RS19265 (PNF30_19265) gyrB 3764974..3766890 (-) 1917 WP_111292035.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PNF30_RS19270 (PNF30_19270) remB 3766948..3767193 (-) 246 WP_056766786.1 extracellular matrix regulator RemB -
  PNF30_RS19275 (PNF30_19275) recF 3767211..3768323 (-) 1113 WP_061406450.1 DNA replication/repair protein RecF Machinery gene
  PNF30_RS19280 (PNF30_19280) yaaA 3768340..3768555 (-) 216 WP_048238335.1 S4 domain-containing protein YaaA -
  PNF30_RS19285 (PNF30_19285) dnaN 3768706..3769842 (-) 1137 WP_048238334.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42545.61 Da        Isoelectric Point: 7.3662

>NTDB_id=780210 PNF30_RS19275 WP_061406450.1 3767211..3768323(-) (recF) [Bacillus safensis strain SRCM125915]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=780210 PNF30_RS19275 WP_061406450.1 3767211..3768323(-) (recF) [Bacillus safensis strain SRCM125915]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATTTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACAGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCCCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAAGGTCGTGTACAGACCTTCGTCACTACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835