Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PNF30_RS19040 Genome accession   NZ_CP116774
Coordinates   3723822..3724112 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3718822..3729112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS19025 (PNF30_19025) - 3719007..3720209 (-) 1203 WP_272510558.1 G5 and 3D domain-containing protein -
  PNF30_RS19030 (PNF30_19030) - 3720454..3721221 (-) 768 WP_048239541.1 TatD family hydrolase -
  PNF30_RS19035 (PNF30_19035) metG 3721302..3723302 (-) 2001 WP_048239539.1 methionine--tRNA ligase -
  PNF30_RS19040 (PNF30_19040) abrB 3723822..3724112 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PNF30_RS19045 (PNF30_19045) rsmI 3724157..3725038 (-) 882 WP_144473104.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PNF30_RS19050 (PNF30_19050) - 3725013..3725312 (-) 300 WP_041105706.1 GIY-YIG nuclease family protein -
  PNF30_RS19055 (PNF30_19055) - 3725299..3726042 (-) 744 WP_048239534.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PNF30_RS19060 (PNF30_19060) yabA 3726098..3726451 (-) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  PNF30_RS19065 (PNF30_19065) - 3726466..3727293 (-) 828 WP_024425628.1 PSP1 domain-containing protein -
  PNF30_RS19070 (PNF30_19070) holB 3727296..3728285 (-) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  PNF30_RS19075 (PNF30_19075) - 3728297..3728737 (-) 441 WP_095407530.1 YaaR family protein -
  PNF30_RS19080 (PNF30_19080) - 3728750..3729079 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=780208 PNF30_RS19040 WP_087975202.1 3723822..3724112(+) (abrB) [Bacillus safensis strain SRCM125915]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=780208 PNF30_RS19040 WP_087975202.1 3723822..3724112(+) (abrB) [Bacillus safensis strain SRCM125915]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938