Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QYT30_RS00780 Genome accession   NZ_CP129557
Coordinates   159280..159996 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   P0A0I7
Organism   Staphylococcus aureus strain 46D     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 154280..164996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT30_RS00765 (QYT30_00775) - 155367..156317 (+) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -
  QYT30_RS00770 (QYT30_00780) - 156466..157950 (+) 1485 WP_000141407.1 sucrose-6-phosphate hydrolase -
  QYT30_RS00775 (QYT30_00785) - 157947..158906 (+) 960 WP_001253294.1 carbohydrate kinase family protein -
  QYT30_RS00780 (QYT30_00790) agrA 159280..159996 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  QYT30_RS00785 (QYT30_00795) agrC 160015..161307 (-) 1293 WP_001825886.1 quorum-sensing sensor histidine kinase AgrC -
  QYT30_RS00790 (QYT30_00800) agrD 161332..161472 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  QYT30_RS00795 (QYT30_00805) agrB 161469..162038 (-) 570 WP_001105708.1 accessory gene regulator AgrB -
  QYT30_RS00800 hld 162328..162408 (+) 81 WP_000046022.1 delta-hemolysin -
  QYT30_RS00805 (QYT30_00815) - 163010..163795 (-) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  QYT30_RS00810 (QYT30_00820) - 164103..164729 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=780190 QYT30_RS00780 WP_000688492.1 159280..159996(-) (agrA) [Staphylococcus aureus strain 46D]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=780190 QYT30_RS00780 WP_000688492.1 159280..159996(-) (agrA) [Staphylococcus aureus strain 46D]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BS1
  PDB 4G4K

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1