Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   PNF30_RS12625 Genome accession   NZ_CP116774
Coordinates   2460549..2462651 (+) Length   700 a.a.
NCBI ID   WP_197197787.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2455549..2467651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS12595 (PNF30_12595) - 2456172..2456390 (-) 219 WP_120207154.1 hypothetical protein -
  PNF30_RS12600 (PNF30_12600) queF 2456650..2457147 (-) 498 WP_003211403.1 preQ(1) synthase -
  PNF30_RS12605 (PNF30_12605) queE 2457163..2457894 (-) 732 WP_095408339.1 7-carboxy-7-deazaguanine synthase QueE -
  PNF30_RS12610 (PNF30_12610) queD 2457887..2458327 (-) 441 WP_272510250.1 6-carboxytetrahydropterin synthase QueD -
  PNF30_RS12615 (PNF30_12615) queC 2458328..2458984 (-) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  PNF30_RS12620 (PNF30_12620) - 2459261..2460304 (-) 1044 WP_095408337.1 hypothetical protein -
  PNF30_RS12625 (PNF30_12625) clpC 2460549..2462651 (+) 2103 WP_197197787.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  PNF30_RS12630 (PNF30_12630) motA 2463028..2463822 (+) 795 WP_024424680.1 flagellar motor stator protein MotA -
  PNF30_RS12635 (PNF30_12635) motB 2463815..2464585 (+) 771 WP_197197786.1 flagellar motor protein MotB -
  PNF30_RS12640 (PNF30_12640) - 2464610..2465068 (-) 459 WP_272510251.1 MarR family winged helix-turn-helix transcriptional regulator -
  PNF30_RS12645 (PNF30_12645) - 2465273..2466778 (+) 1506 WP_197197785.1 ATP-binding protein -
  PNF30_RS12650 (PNF30_12650) - 2466825..2467067 (-) 243 WP_034322108.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77826.33 Da        Isoelectric Point: 5.0720

>NTDB_id=780189 PNF30_RS12625 WP_197197787.1 2460549..2462651(+) (clpC) [Bacillus safensis strain SRCM125915]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTDKEHIVTAEDIQTIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHIFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDRNDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=780189 PNF30_RS12625 WP_197197787.1 2460549..2462651(+) (clpC) [Bacillus safensis strain SRCM125915]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTGTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGACATGCCCCAAACGGGGAGCAGCCAAAGCAAAAGGGCTTACTCGATGAGCTTGGCCGAAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAATCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TGAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGCTCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAACTGCAGCTAGTAGGTGCAACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAAGCCTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAATCGATTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGACAAAGAACATATCGTCACAG
CAGAGGACATTCAGACCATTGTGGAACAAAAAACAGGCATTCCTGTCGGTAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAACATGCAGTTGACAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCGACTGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACGG
AATTGTCTAAAACGCTGGCTGAAGAATTATTTGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATCTTCCTTCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGTGCAGATAAAACGGTCAAGGTCGGCTTCCAGTCTGATCAAGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCAGCTACTTCAAACCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGACAGAAATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGGAGAACCATCCAAGA
GCACGTTGAAGATCAAATGACGGAGATCTTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

AAA lid domain (AAA_lid_9)

(253-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

56.199

100

0.596
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

54.179

95.714

0.519
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.086

93.143

0.439
  clpC Streptococcus thermophilus LMD-9

46.13

92.286

0.426
  clpC Streptococcus thermophilus LMG 18311

45.82

92.286

0.423
  clpC Streptococcus pneumoniae TIGR4

44.795

90.571

0.406
  clpC Streptococcus pneumoniae Rx1

44.992

89.857

0.404
  clpC Streptococcus pneumoniae D39

44.992

89.857

0.404
  clpC Streptococcus mutans UA159

44.603

90

0.401