Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PNF30_RS12450 Genome accession   NZ_CP116774
Coordinates   2424964..2425425 (+) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2419964..2430425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS12420 (PNF30_12420) - 2420366..2421223 (+) 858 WP_272510239.1 metallophosphoesterase -
  PNF30_RS12425 (PNF30_12425) - 2421380..2421877 (+) 498 WP_095408361.1 L,D-transpeptidase family protein -
  PNF30_RS12430 (PNF30_12430) - 2421951..2423228 (+) 1278 WP_048238778.1 MFS transporter -
  PNF30_RS12435 (PNF30_12435) - 2423475..2423690 (+) 216 WP_075622942.1 hypothetical protein -
  PNF30_RS12440 (PNF30_12440) - 2423841..2423981 (-) 141 Protein_2461 EamA family transporter -
  PNF30_RS12445 (PNF30_12445) - 2424314..2424490 (-) 177 WP_272510240.1 hypothetical protein -
  PNF30_RS12450 (PNF30_12450) kre 2424964..2425425 (+) 462 WP_008356877.1 YkyB family protein Regulator
  PNF30_RS12455 (PNF30_12455) - 2425463..2426371 (-) 909 WP_095408359.1 chemotaxis protein -
  PNF30_RS12460 (PNF30_12460) - 2426445..2427755 (-) 1311 WP_263640180.1 MFS transporter -
  PNF30_RS12465 (PNF30_12465) - 2427881..2428420 (-) 540 WP_024424707.1 RDD family protein -
  PNF30_RS12470 (PNF30_12470) - 2428722..2428874 (+) 153 WP_203129734.1 hypothetical protein -
  PNF30_RS12475 (PNF30_12475) - 2428939..2429823 (-) 885 WP_203129733.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=780188 PNF30_RS12450 WP_008356877.1 2424964..2425425(+) (kre) [Bacillus safensis strain SRCM125915]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=780188 PNF30_RS12450 WP_008356877.1 2424964..2425425(+) (kre) [Bacillus safensis strain SRCM125915]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGAGCGCTGCAAAAACTATTACAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765