Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PNF30_RS12330 Genome accession   NZ_CP116774
Coordinates   2406330..2406902 (-) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2401330..2411902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS12300 (PNF30_12300) - 2401371..2401862 (-) 492 WP_272510233.1 molybdenum cofactor biosynthesis protein MoaE -
  PNF30_RS12305 (PNF30_12305) mobB 2401859..2402383 (-) 525 WP_249857153.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  PNF30_RS12310 (PNF30_12310) glp 2402365..2403642 (-) 1278 WP_249857152.1 gephyrin-like molybdotransferase Glp -
  PNF30_RS12315 (PNF30_12315) - 2403652..2404668 (-) 1017 WP_249857151.1 thiazole biosynthesis adenylyltransferase ThiF -
  PNF30_RS12320 (PNF30_12320) - 2404699..2405280 (-) 582 WP_272510234.1 molybdenum cofactor guanylyltransferase -
  PNF30_RS12325 (PNF30_12325) - 2405366..2406283 (+) 918 WP_249857150.1 sigmaE regulated sporulation protein -
  PNF30_RS12330 (PNF30_12330) rok 2406330..2406902 (-) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  PNF30_RS12335 (PNF30_12335) - 2407384..2407842 (-) 459 WP_024424727.1 TlpA family protein disulfide reductase -
  PNF30_RS12340 (PNF30_12340) ahpA 2407925..2408467 (-) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  PNF30_RS12345 (PNF30_12345) - 2408740..2409549 (+) 810 WP_095408368.1 mechanosensitive ion channel family protein -
  PNF30_RS12350 (PNF30_12350) - 2409571..2409813 (-) 243 WP_272511025.1 YkuS family protein -
  PNF30_RS12355 (PNF30_12355) - 2409864..2411042 (-) 1179 WP_272510235.1 N-acetyldiaminopimelate deacetylase -
  PNF30_RS12360 (PNF30_12360) dapD 2411077..2411787 (-) 711 WP_095408367.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=780187 PNF30_RS12330 WP_024426871.1 2406330..2406902(-) (rok) [Bacillus safensis strain SRCM125915]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=780187 PNF30_RS12330 WP_024426871.1 2406330..2406902(-) (rok) [Bacillus safensis strain SRCM125915]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAATGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAGAGAAAGACGGATTCACTCCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCTTCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAGCGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGTTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8