Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PNF30_RS12220 Genome accession   NZ_CP116774
Coordinates   2386665..2386943 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus safensis strain SRCM125915     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2381665..2391943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS12200 (PNF30_12200) ade 2381670..2383400 (-) 1731 WP_272510224.1 adenine deaminase -
  PNF30_RS12205 (PNF30_12205) - 2383663..2384331 (-) 669 WP_008345123.1 potassium channel family protein -
  PNF30_RS12210 (PNF30_12210) - 2384369..2385205 (-) 837 WP_272510225.1 gamma-glutamylcyclotransferase -
  PNF30_RS12215 (PNF30_12215) - 2385210..2386520 (-) 1311 WP_272510226.1 ATP-binding protein -
  PNF30_RS12220 (PNF30_12220) abrB 2386665..2386943 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PNF30_RS12225 (PNF30_12225) mreBH 2387220..2388227 (+) 1008 WP_024424745.1 rod-share determining protein MreBH -
  PNF30_RS12230 (PNF30_12230) - 2388302..2388433 (+) 132 WP_003210922.1 protein YkpC -
  PNF30_RS12235 (PNF30_12235) - 2388540..2389772 (+) 1233 WP_095408383.1 aminopeptidase -
  PNF30_RS12240 (PNF30_12240) - 2389807..2391426 (-) 1620 WP_272510227.1 ABC-F family ATP-binding cassette domain-containing protein -
  PNF30_RS12245 (PNF30_12245) - 2391570..2391845 (+) 276 WP_095408381.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=780186 PNF30_RS12220 WP_017359400.1 2386665..2386943(-) (abrB) [Bacillus safensis strain SRCM125915]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=780186 PNF30_RS12220 WP_017359400.1 2386665..2386943(-) (abrB) [Bacillus safensis strain SRCM125915]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543