Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PNF30_RS08885 Genome accession   NZ_CP116774
Coordinates   1718433..1719068 (-) Length   211 a.a.
NCBI ID   WP_095408853.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1713433..1724068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS08865 (PNF30_08865) - 1713786..1714490 (+) 705 WP_095408857.1 DnaD domain-containing protein -
  PNF30_RS08870 (PNF30_08870) nth 1714508..1715170 (+) 663 WP_144484483.1 endonuclease III -
  PNF30_RS08875 (PNF30_08875) - 1715167..1715676 (+) 510 WP_144470943.1 YpoC family protein -
  PNF30_RS08880 (PNF30_08880) - 1715714..1718413 (-) 2700 WP_272510956.1 PBP1A family penicillin-binding protein -
  PNF30_RS08885 (PNF30_08885) recU 1718433..1719068 (-) 636 WP_095408853.1 Holliday junction resolvase RecU Machinery gene
  PNF30_RS08890 (PNF30_08890) - 1719115..1720071 (+) 957 WP_272510957.1 DUF2515 domain-containing protein -
  PNF30_RS08895 (PNF30_08895) sspM 1720095..1720199 (-) 105 WP_012010346.1 acid-soluble spore protein SspM -
  PNF30_RS08900 (PNF30_08900) - 1720397..1720630 (+) 234 WP_223251001.1 DUF5446 family protein -
  PNF30_RS08905 (PNF30_08905) - 1720680..1721060 (+) 381 WP_269195301.1 YppE family protein -
  PNF30_RS08910 (PNF30_08910) - 1721168..1721626 (+) 459 WP_223250999.1 YppG family protein -
  PNF30_RS08915 (PNF30_08915) - 1721647..1722066 (-) 420 WP_272510958.1 Hsp20/alpha crystallin family protein -
  PNF30_RS08920 (PNF30_08920) - 1722235..1722741 (+) 507 WP_095408850.1 PTS sugar transporter subunit IIA -
  PNF30_RS08925 (PNF30_08925) - 1722800..1723918 (-) 1119 WP_269195300.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.63 Da        Isoelectric Point: 9.6581

>NTDB_id=780180 PNF30_RS08885 WP_095408853.1 1718433..1719068(-) (recU) [Bacillus safensis strain SRCM125915]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQQ
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=780180 PNF30_RS08885 WP_095408853.1 1718433..1719068(-) (recU) [Bacillus safensis strain SRCM125915]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACGGACTATAACGGAGTGTACAAAGGTCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCAGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697