Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PNF29_RS21565 Genome accession   NZ_CP116773
Coordinates   4065189..4065479 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM125727     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4060189..4070479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS21550 (PNF29_21550) yabE 4060385..4061698 (-) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -
  PNF29_RS21555 (PNF29_21555) dayD 4061854..4062621 (-) 768 WP_041334230.1 TatD family hydrolase -
  PNF29_RS21560 (PNF29_21560) metG 4062700..4064694 (-) 1995 WP_014662479.1 methionine--tRNA ligase -
  PNF29_RS21565 (PNF29_21565) abrB 4065189..4065479 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  PNF29_RS21570 (PNF29_21570) rsmI 4065528..4066406 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PNF29_RS21575 (PNF29_21575) yazA 4066381..4066680 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  PNF29_RS21580 (PNF29_21580) trmNF 4066667..4067410 (-) 744 WP_144453708.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PNF29_RS21585 (PNF29_21585) yabA 4067469..4067828 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  PNF29_RS21590 (PNF29_21590) ricT 4067843..4068670 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  PNF29_RS21595 (PNF29_21595) holB 4068673..4069662 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  PNF29_RS21600 (PNF29_21600) yaaR 4069674..4070114 (-) 441 WP_041334235.1 YaaR family protein -
  PNF29_RS21605 (PNF29_21605) darA 4070127..4070456 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=780148 PNF29_RS21565 WP_003226760.1 4065189..4065479(+) (abrB) [Bacillus subtilis strain SRCM125727]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=780148 PNF29_RS21565 WP_003226760.1 4065189..4065479(+) (abrB) [Bacillus subtilis strain SRCM125727]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1