Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PNF29_RS15675 Genome accession   NZ_CP116773
Coordinates   2939866..2940444 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2934866..2945444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS15640 (PNF29_15640) lepB 2934871..2935377 (-) 507 WP_003233128.1 signal peptidase I -
  PNF29_RS15645 (PNF29_15645) yhjE 2935379..2936002 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  PNF29_RS15650 (PNF29_15650) - 2936154..2936525 (+) 372 WP_014476361.1 hypothetical protein -
  PNF29_RS15655 (PNF29_15655) yhjC 2936724..2936924 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PNF29_RS15660 (PNF29_15660) yhjB 2936921..2938390 (+) 1470 WP_017695341.1 sodium:solute symporter family protein -
  PNF29_RS15665 (PNF29_15665) yhjA 2938434..2938703 (-) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  PNF29_RS15670 (PNF29_15670) yhxD 2938920..2939819 (+) 900 WP_210216546.1 SDR family oxidoreductase -
  PNF29_RS15675 (PNF29_15675) comK 2939866..2940444 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  PNF29_RS15680 (PNF29_15680) yhzC 2940737..2940970 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  PNF29_RS15685 (PNF29_15685) yhxC 2940998..2941855 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  PNF29_RS15690 (PNF29_15690) comW 2941959..2943488 (+) 1530 WP_272515626.1 FAD-dependent oxidoreductase -
  PNF29_RS21925 hemAT 2943744..2944121 (+) 378 Protein_3104 heme-based aerotactic transducer HemAT -
  PNF29_RS21930 - 2944128..2944925 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=780133 PNF29_RS15675 WP_029317573.1 2939866..2940444(-) (comK) [Bacillus subtilis strain SRCM125727]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=780133 PNF29_RS15675 WP_029317573.1 2939866..2940444(-) (comK) [Bacillus subtilis strain SRCM125727]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995