Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PNF29_RS13600 Genome accession   NZ_CP116773
Coordinates   2562330..2562794 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain SRCM125727     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2557330..2567794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS13580 (PNF29_13580) fadH 2558518..2559282 (-) 765 WP_017697272.1 2,4-dienoyl-CoA reductase -
  PNF29_RS13585 (PNF29_13585) ppeE 2559425..2560285 (+) 861 WP_017697271.1 metallophosphoesterase -
  PNF29_RS13590 (PNF29_13590) ltdD 2560342..2560836 (+) 495 WP_072557193.1 L,D-transpeptidase family protein -
  PNF29_RS13595 (PNF29_13595) ykuC 2560912..2562204 (+) 1293 WP_017697269.1 MFS transporter -
  PNF29_RS13600 (PNF29_13600) kre 2562330..2562794 (+) 465 WP_003232406.1 YkyB family protein Regulator
  PNF29_RS13605 (PNF29_13605) cheV 2562838..2563749 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  PNF29_RS13610 (PNF29_13610) - 2563953..2564114 (+) 162 WP_003245246.1 hypothetical protein -
  PNF29_RS13615 (PNF29_13615) dapX 2564316..2565497 (+) 1182 WP_017697268.1 aminotransferase A -
  PNF29_RS13620 (PNF29_13620) kinA 2565507..2567327 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=780121 PNF29_RS13600 WP_003232406.1 2562330..2562794(+) (kre) [Bacillus subtilis strain SRCM125727]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=780121 PNF29_RS13600 WP_003232406.1 2562330..2562794(+) (kre) [Bacillus subtilis strain SRCM125727]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCCAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1