Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PNF29_RS09200 Genome accession   NZ_CP116773
Coordinates   1738394..1739197 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1733394..1744197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS09180 (PNF29_09180) yqxC 1733505..1734350 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  PNF29_RS09185 (PNF29_09185) argR 1734448..1734897 (+) 450 WP_003230265.1 arginine repressor ArgR -
  PNF29_RS09190 (PNF29_09190) recN 1734934..1736664 (+) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  PNF29_RS09195 (PNF29_09195) spoIVB 1736838..1738118 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  PNF29_RS09200 (PNF29_09200) spo0A 1738394..1739197 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PNF29_RS09205 (PNF29_09205) yqiG 1739662..1740780 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  PNF29_RS09210 (PNF29_09210) - 1740852..1741004 (-) 153 WP_129137781.1 hypothetical protein -
  PNF29_RS09215 (PNF29_09215) - 1741312..1741608 (+) 297 WP_144453281.1 hypothetical protein -
  PNF29_RS09220 (PNF29_09220) yqiI 1741628..1742248 (+) 621 WP_272516121.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PNF29_RS09225 (PNF29_09225) glpQB 1742327..1743058 (+) 732 WP_041334913.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=780113 PNF29_RS09200 WP_003226427.1 1738394..1739197(+) (spo0A) [Bacillus subtilis strain SRCM125727]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=780113 PNF29_RS09200 WP_003226427.1 1738394..1739197(+) (spo0A) [Bacillus subtilis strain SRCM125727]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1