Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PNF29_RS07475 Genome accession   NZ_CP116773
Coordinates   1436301..1437047 (+) Length   248 a.a.
NCBI ID   WP_026113741.1    Uniprot ID   A0AAQ3EXH2
Organism   Bacillus subtilis strain SRCM125727     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431301..1442047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS07460 (PNF29_07460) - 1431529..1431720 (-) 192 WP_003222590.1 hypothetical protein -
  PNF29_RS07465 (PNF29_07465) valS 1432168..1434810 (+) 2643 WP_041336240.1 valine--tRNA ligase -
  PNF29_RS07470 (PNF29_07470) folC 1434870..1436162 (+) 1293 WP_041339279.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PNF29_RS07475 (PNF29_07475) comC 1436301..1437047 (+) 747 WP_026113741.1 prepilin peptidase Machinery gene
  PNF29_RS07480 (PNF29_07480) spoIIB 1437181..1438179 (+) 999 WP_272516077.1 stage II sporulation protein SpoIIB -
  PNF29_RS07485 (PNF29_07485) maf 1438332..1438901 (+) 570 WP_272516078.1 Maf family nucleotide pyrophosphatase -
  PNF29_RS07490 (PNF29_07490) radC 1438938..1439633 (+) 696 WP_041351757.1 RadC family protein -
  PNF29_RS07495 (PNF29_07495) mreB 1439725..1440738 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  PNF29_RS07500 (PNF29_07500) mreC 1440769..1441641 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=780095 PNF29_RS07475 WP_026113741.1 1436301..1437047(+) (comC) [Bacillus subtilis strain SRCM125727]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=780095 PNF29_RS07475 WP_026113741.1 1436301..1437047(+) (comC) [Bacillus subtilis strain SRCM125727]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGTTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGGGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992