Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   PND17_RS05810 Genome accession   NZ_CP116772
Coordinates   1109018..1109461 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104018..1114461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS05790 (PND17_05790) - 1104540..1105292 (-) 753 Protein_1141 NUDIX domain-containing protein -
  PND17_RS05795 (PND17_05795) - 1105356..1106463 (-) 1108 Protein_1142 AAA family ATPase -
  PND17_RS05800 (PND17_05800) gdhA 1106807..1108159 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  PND17_RS05805 (PND17_05805) - 1108417..1108827 (+) 411 WP_011680804.1 peptide deformylase -
  PND17_RS05810 (PND17_05810) rcrR 1109018..1109461 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  PND17_RS05815 (PND17_05815) rcrP 1109465..1111279 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  PND17_RS05820 (PND17_05820) rcrQ 1111269..1113047 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  PND17_RS05825 (PND17_05825) - 1113203..1113574 (+) 372 WP_271298454.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=780050 PND17_RS05810 WP_002945408.1 1109018..1109461(+) (rcrR) [Streptococcus thermophilus strain strain TSGB 4141]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=780050 PND17_RS05810 WP_002945408.1 1109018..1109461(+) (rcrR) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAATAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537