Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PND17_RS01900 Genome accession   NZ_CP116772
Coordinates   358937..359668 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 353937..364668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS01875 (PND17_01875) - 355002..356183 (+) 1182 WP_271298034.1 NAD(P)/FAD-dependent oxidoreductase -
  PND17_RS01885 (PND17_01885) trmB 356403..357044 (-) 642 WP_271298033.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PND17_RS01890 (PND17_01890) ccrZ 357054..357845 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  PND17_RS01895 (PND17_01895) pptB 357903..358937 (-) 1035 WP_416370401.1 ABC transporter permease Regulator
  PND17_RS01900 (PND17_01900) pptA 358937..359668 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  PND17_RS01905 (PND17_01905) - 359733..360152 (+) 420 WP_011226437.1 HIT family protein -
  PND17_RS01910 (PND17_01910) - 360149..360448 (+) 300 WP_232971274.1 hypothetical protein -
  PND17_RS01915 (PND17_01915) - 361250..361885 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  PND17_RS01920 (PND17_01920) - 361904..362029 (-) 126 WP_260215148.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=780025 PND17_RS01900 WP_002951673.1 358937..359668(-) (pptA) [Streptococcus thermophilus strain strain TSGB 4141]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=780025 PND17_RS01900 WP_002951673.1 358937..359668(-) (pptA) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTATCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971