Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PJU73_RS06595 Genome accession   NZ_CP116766
Coordinates   1444551..1446593 (-) Length   680 a.a.
NCBI ID   WP_237091329.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1439551..1451593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS06575 (PJU73_06575) - 1439885..1440814 (-) 930 WP_237091333.1 biotin-dependent carboxyltransferase family protein -
  PJU73_RS06580 (PJU73_06580) pxpB 1440811..1441458 (-) 648 WP_237091332.1 5-oxoprolinase subunit PxpB -
  PJU73_RS06585 (PJU73_06585) - 1441758..1443950 (+) 2193 WP_237091331.1 UvrD-helicase domain-containing protein -
  PJU73_RS06590 (PJU73_06590) - 1444076..1444510 (-) 435 WP_237091330.1 hypothetical protein -
  PJU73_RS06595 (PJU73_06595) recG 1444551..1446593 (-) 2043 WP_237091329.1 ATP-dependent DNA helicase RecG Machinery gene
  PJU73_RS06600 (PJU73_06600) secB 1446792..1447223 (-) 432 WP_237091328.1 protein-export chaperone SecB -
  PJU73_RS06605 (PJU73_06605) grxC 1447236..1447499 (-) 264 WP_237091327.1 glutaredoxin 3 -
  PJU73_RS06610 (PJU73_06610) rng 1447786..1449279 (+) 1494 WP_237091326.1 ribonuclease G -
  PJU73_RS06615 (PJU73_06615) - 1449390..1450355 (-) 966 WP_237091325.1 hypothetical protein -
  PJU73_RS06620 (PJU73_06620) - 1450383..1450595 (-) 213 WP_237091324.1 hypothetical protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75261.96 Da        Isoelectric Point: 7.5629

>NTDB_id=780000 PJU73_RS06595 WP_237091329.1 1444551..1446593(-) (recG) [Neisseria lisongii strain ZJ106]
MMPTETQKQLKITENAAKKLAKLNIQTAWDLALHLPLRYEDETHVMPIADAPLGVPCQVEGTVLFQEVQFRPRRQLVVRI
ADHSGSVLHLRFIHFYPSHQKQLAEGKRIRAVGEIKHGFFGDEMIHPKIRDAENSGLAESLTPVYPTVNGLTQPNLRRMI
QTALDSLPLHDTLPDDLLGRLNLPHLAESLRLLHAPPPELTVQQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRISGEA
KPLNGDGSLSLRLLNALPFALTQAQQRVVGEIRADLAHTYPMHRLLQGDVGSGKTIVAALAALTAIEADTQVAVMAPTEI
LAEQHFIKFKQWFEPLGLNVAWLSGSQRKKAKDQNKTAVSDGLAHITVGTHALFQDDVQFHNLGLVIVDEQHRFGVAQRL
ALKNKGCDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIKTRLVNSARRAEVEGFVLATCRKGQQAYWVCPLI
EESETLQLQTATDTLAVLQQALPELKIGLVHGRMKAAEKAGIMSEFSAGRLNVLVATTVIEVGVDVPNASLMVIEHAERM
GLAQLHQLRGRVGRGAAASACVLLFSEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLQLLEKARELAPQLIDHHPATVTAHLNRWLASRESYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=780000 PJU73_RS06595 WP_237091329.1 1444551..1446593(-) (recG) [Neisseria lisongii strain ZJ106]
ATGATGCCGACCGAAACGCAGAAACAGCTCAAAATTACCGAAAATGCCGCCAAAAAACTCGCCAAACTCAATATTCAGAC
GGCTTGGGATTTGGCGTTGCACCTACCGCTGCGTTATGAAGACGAAACCCATGTGATGCCGATTGCCGATGCCCCTTTGG
GCGTACCGTGTCAGGTAGAAGGCACGGTTTTGTTTCAAGAAGTGCAGTTCCGCCCCCGCCGCCAGTTGGTGGTGCGGATT
GCCGACCATTCCGGCAGCGTGCTGCATTTGCGCTTTATCCACTTTTATCCCAGCCATCAAAAACAGCTTGCCGAAGGCAA
ACGCATTCGGGCGGTCGGCGAAATCAAACACGGTTTTTTCGGCGATGAAATGATACACCCGAAAATCCGTGATGCCGAAA
ACAGCGGTTTGGCAGAAAGCCTGACACCGGTTTACCCGACCGTAAACGGTCTGACCCAACCCAACCTGCGCCGCATGATT
CAGACGGCATTAGACAGCTTACCGCTGCATGACACCTTGCCCGACGACTTATTAGGCCGTCTGAATTTGCCGCATCTTGC
CGAAAGCCTGCGCCTGCTGCATGCCCCGCCGCCCGAACTGACCGTACAGCAGCTTTCAGACGGCACCTTGCCCGCATGGC
AGCGGCTCAAATTTGACGAACTGCTGGCGCAGCAATTATCCATGCGGCTGGCACGGCAAAAGCGGATCAGCGGCGAAGCC
AAACCCTTAAACGGCGACGGCAGCCTGTCCCTCCGGCTGCTGAACGCCTTACCGTTTGCCCTCACGCAGGCGCAGCAGCG
TGTCGTCGGTGAAATTCGTGCCGACCTCGCCCACACTTATCCCATGCACCGCCTGCTGCAGGGCGATGTCGGCAGCGGCA
AAACCATTGTCGCCGCCCTTGCCGCCCTGACCGCCATTGAAGCCGACACGCAAGTGGCAGTGATGGCACCGACCGAAATT
CTCGCCGAACAGCATTTCATCAAATTCAAACAATGGTTTGAACCGCTCGGTCTGAACGTGGCATGGCTTTCCGGCAGCCA
GCGTAAAAAAGCCAAAGACCAAAACAAAACCGCCGTTTCAGACGGCCTTGCCCACATCACCGTCGGCACCCACGCCCTGT
TTCAAGACGACGTTCAGTTTCACAATCTCGGCTTAGTGATTGTGGACGAGCAGCACCGCTTCGGCGTAGCGCAGCGGTTG
GCCTTGAAAAACAAAGGCTGCGACGTTCACCAACTGATGATGTCCGCCACCCCCATTCCCCGCACCTTGGCCATGAGTTT
TTTCGCCGATTTAGACGTATCCGTGATTGACGAATTGCCCCCCAACCGCACCCCGATTAAAACCCGACTGGTCAACAGCG
CCCGCCGTGCCGAAGTCGAAGGCTTCGTATTGGCCACATGCCGCAAAGGACAGCAGGCATATTGGGTATGCCCGCTGATT
GAAGAGAGCGAAACCCTGCAGCTGCAAACCGCCACCGACACCCTCGCCGTTTTACAGCAGGCATTGCCCGAACTCAAAAT
CGGCTTGGTACACGGCCGCATGAAAGCCGCCGAAAAAGCCGGAATCATGAGCGAATTTTCCGCCGGACGGCTCAATGTTT
TAGTCGCAACCACCGTCATCGAAGTCGGCGTGGACGTTCCCAACGCCAGCCTGATGGTCATCGAACACGCCGAACGCATG
GGCTTGGCGCAGCTTCACCAACTGCGGGGGCGGGTCGGCCGGGGCGCAGCCGCCAGCGCTTGCGTTTTACTGTTTTCCGA
ACCCCTGAGCGAATTGGCAAAAGCCCGCCTGAAAGTGATTTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAACATCCGAGGCCCCGGCGAATTTCTCGGCGCACGCCAGAGCGGCGTACCCATGCTGCGTTTCGCCAATTTAGAAGAA
GATTTGCAACTCTTAGAAAAAGCCAGAGAACTCGCCCCGCAACTGATCGACCACCACCCCGCAACCGTAACCGCCCACCT
CAACCGCTGGCTCGCCAGCCGGGAAAGCTATCTGGGCGTGTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

DEAD/DEAH box helicase (DEAD)

(284-421)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

RecG wedge domain (RecG_wedge)

(12-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

81.765

100

0.818