Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   PJU73_RS04430 Genome accession   NZ_CP116766
Coordinates   993170..994918 (-) Length   582 a.a.
NCBI ID   WP_237090501.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988170..999918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS04420 (PJU73_04420) - 990177..990824 (+) 648 WP_237090499.1 alpha/beta hydrolase-fold protein -
  PJU73_RS04425 (PJU73_04425) mutL 991036..992973 (+) 1938 WP_237090500.1 DNA mismatch repair endonuclease MutL -
  PJU73_RS04430 (PJU73_04430) recD 993170..994918 (-) 1749 WP_237090501.1 exodeoxyribonuclease V subunit alpha Machinery gene
  PJU73_RS04435 (PJU73_04435) lolD 995141..995821 (-) 681 WP_237090502.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PJU73_RS04440 (PJU73_04440) - 995814..997061 (-) 1248 WP_237090503.1 lipoprotein-releasing ABC transporter permease subunit -
  PJU73_RS04445 (PJU73_04445) brnQ 997382..998707 (-) 1326 WP_237090504.1 branched-chain amino acid transport system II carrier protein -
  PJU73_RS04450 (PJU73_04450) - 999088..999285 (-) 198 WP_237090505.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63959.80 Da        Isoelectric Point: 6.5598

>NTDB_id=779992 PJU73_RS04430 WP_237090501.1 993170..994918(-) (recD) [Neisseria lisongii strain ZJ106]
MFSVELEQAAAQAADWLLQHHSPEQAKIAGPFVAQLFTALSHGHSFIWLNDEQATLLAAQTDLVGQDGNTPLILIGKRLF
LGRLWQLERDLAQEIKRLAHSKISVANEQQTAANLAAWFPDTDSKGQRDAAALALLQTFMLIIGGPGTGKTTTVAKLLGL
ICSNAATLPKIALAAPTGKAAAHMARALHSALSRFDLPPAVAQHLAQLEGQTVHRLLKLRPPQMQPQFDRRTPLPVDVLV
VDEASMLDVSLLLQLLRALPEGCRVIFLGDADQLPSVGVGAVLAALSQPTVLNRETAQKLSRYLPDFAFPVADNPPPLSA
NIARLTFSHRFGENSGIGCVARAVVAGDTSASWAQFAHFPNELAAVSGDVRTQVQQFYRKQEAFWQAVDSNHLPQAFSRI
ADIVMLTAWRQDAETFNQAYTEYLRQRRRIEGDGTWFAGRIIMITRNHYSLDLFNGDIGLVLPDSEDTENLAAYFPDGDG
FKKIAISRLPDCESAFAMTVHKSQGSEYREVWLLPPSSEAAESEDITSGLNNALLYTAITRAREHFVFWGGQPAWNESVG
KIKKRQTALDYFIRRQFNGEAV

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=779992 PJU73_RS04430 WP_237090501.1 993170..994918(-) (recD) [Neisseria lisongii strain ZJ106]
ATGTTTTCTGTGGAATTAGAACAGGCAGCAGCACAGGCGGCAGATTGGCTGCTGCAACACCATTCGCCCGAACAGGCTAA
GATTGCAGGGCCGTTTGTAGCACAGTTGTTCACCGCCTTGAGCCATGGCCATTCGTTTATCTGGCTCAACGATGAACAGG
CCACTTTATTGGCGGCGCAAACCGATTTGGTCGGGCAGGACGGCAACACCCCTTTGATTTTAATCGGCAAACGCCTGTTT
TTAGGCCGTTTGTGGCAGCTTGAACGGGATTTGGCGCAGGAAATCAAACGGCTGGCGCACAGCAAAATCAGCGTGGCAAA
CGAGCAGCAGACTGCAGCCAATCTCGCCGCATGGTTTCCCGATACCGACAGCAAAGGGCAGCGTGATGCAGCGGCATTGG
CGCTGCTGCAAACCTTTATGCTGATTATCGGCGGCCCGGGAACGGGCAAAACCACCACCGTTGCCAAACTGCTGGGGCTG
ATTTGCAGCAACGCCGCCACCTTGCCGAAAATCGCCTTGGCCGCCCCGACCGGTAAAGCTGCGGCACATATGGCACGGGC
GCTGCACAGTGCCTTGTCCCGCTTTGATTTGCCACCGGCAGTCGCACAACATTTGGCACAGTTGGAAGGGCAGACCGTCC
ACCGCCTTTTGAAACTGCGCCCGCCGCAAATGCAGCCGCAGTTTGACCGCCGCACGCCGTTGCCGGTCGATGTATTGGTG
GTGGATGAGGCTTCTATGCTCGATGTGTCGCTGCTGTTGCAGCTGTTGCGTGCCTTGCCCGAAGGTTGTCGGGTCATTTT
TCTCGGCGATGCCGACCAGCTTCCGTCTGTCGGTGTCGGTGCCGTGTTGGCGGCATTGTCGCAACCGACCGTATTGAATC
GGGAAACCGCACAAAAACTAAGCCGCTACTTACCCGACTTCGCCTTTCCTGTAGCAGACAACCCGCCGCCCCTGTCCGCC
AATATCGCCCGCCTGACTTTCAGTCACCGTTTCGGAGAAAACAGCGGTATCGGCTGCGTGGCAAGGGCTGTGGTAGCAGG
CGATACTTCCGCTTCATGGGCGCAGTTTGCACATTTTCCAAACGAATTGGCGGCCGTATCGGGCGATGTCCGCACGCAGG
TGCAGCAGTTTTACCGCAAACAGGAAGCCTTTTGGCAGGCAGTGGACAGCAACCATTTACCGCAGGCATTCAGCCGCATC
GCCGATATTGTGATGCTGACCGCATGGCGGCAGGACGCAGAAACCTTTAATCAGGCATATACCGAATATCTGCGCCAACG
CCGCCGGATTGAGGGCGACGGCACATGGTTTGCCGGACGGATTATCATGATTACCCGCAACCATTACAGCTTGGATTTGT
TTAACGGCGACATCGGGCTGGTGTTGCCCGACAGCGAAGACACAGAAAACTTGGCAGCCTATTTCCCCGACGGCGACGGG
TTCAAAAAAATCGCCATCAGCCGCCTACCCGACTGCGAATCCGCATTCGCCATGACAGTACACAAAAGCCAAGGCTCGGA
ATATCGGGAAGTCTGGCTGCTCCCGCCGAGCAGCGAAGCAGCCGAAAGCGAAGACATCACTTCAGGCTTGAACAACGCCT
TGCTTTATACCGCCATTACCCGTGCCAGAGAACACTTTGTCTTTTGGGGCGGACAACCCGCATGGAACGAATCCGTAGGC
AAAATCAAAAAACGCCAAACCGCATTGGATTACTTTATCCGGCGGCAGTTTAACGGCGAGGCCGTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-288)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.699

97.079

0.56