Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   PJU73_RS03910 Genome accession   NZ_CP116766
Coordinates   876183..879806 (+) Length   1207 a.a.
NCBI ID   WP_237091979.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 871183..884806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS03900 (PJU73_03900) - 874042..874326 (+) 285 WP_272607615.1 hypothetical protein -
  PJU73_RS09590 - 874401..874517 (-) 117 Protein_765 ESPR domain-containing protein -
  PJU73_RS03905 (PJU73_03905) - 875138..876040 (+) 903 WP_237091978.1 Dyp-type peroxidase -
  PJU73_RS03910 (PJU73_03910) recB 876183..879806 (+) 3624 WP_237091979.1 exodeoxyribonuclease V subunit beta Machinery gene
  PJU73_RS03915 (PJU73_03915) - 879959..880273 (-) 315 WP_237091980.1 integration host factor subunit beta -
  PJU73_RS03920 (PJU73_03920) rpsA 880284..881969 (-) 1686 WP_237091981.1 30S ribosomal protein S1 -
  PJU73_RS03925 (PJU73_03925) cmk 882208..882867 (-) 660 WP_237091982.1 (d)CMP kinase -
  PJU73_RS03930 (PJU73_03930) - 883071..884291 (+) 1221 WP_237091983.1 uracil-xanthine permease family protein -

Sequence

Protein


Download         Length: 1207 a.a.        Molecular weight: 135393.67 Da        Isoelectric Point: 6.0324

>NTDB_id=779990 PJU73_RS03910 WP_237091979.1 876183..879806(+) (recB) [Neisseria lisongii strain ZJ106]
MTSSSARTFDPLAIPIESSNLIEASAGTGKTYGIAALFTRLILLEQLAVDRILVVTFTKAATAELKTRLRARLDEALQVL
EHAPDDEPFSDGISEYCCQHHENDEFLPALLLKALEQESRNRLIVRLKAAISRFDNAAIYTIHGFCQRVLRDYAFLCQSP
FDVALSENDQQIKLQAAQDFWRQTVSGNRELAGLVFKHRCTPESVLAEIQSYAARPYLTPNRPENRLSETRAAAECNWQN
IRQSLADLEQTFWRVHASLNGNAYRKNTFEKVFALLGEASAAGRLPDDAYLHEYLPKFAADRLEEKVKKGQSPDLAAFAK
LQSLANLQRDLSAVAEAEQNALTALKLDLLESLKTALAEQKKSGRSRSFDDLLLDVYHALDGHNPHSGQLAHTIAQNWQV
ALIDEFQDTDPLQYAVFSKIFIGYRNPLFLVGDPKQAIYSFRGADIYAYLQAALDAAHHYTLDTNYRSHSKLIGGINALF
QQKKRPFVLPNIGYSDVKAARAESRLSPPQPAIQIRWLNGKNDEVLPKDALRQRAADYCANEIAYALNEAAQGRLKFKER
AVCSGDIAVLVRTHSEGSMVAEALKKRGVRSVLNGRQSVFAADEAKSLASLLEFFLDSRKTEALSFVLGGPLFGYTAEQL
YRLNHNETLILQWIAAAEAALVQWQEQGIYAAMQGFAGFCGLETSLLKKRNERSLTNYHQLLERLAEEGEHNSRPAALHQ
WLLDQITQAAEGQVGDNNILRLESDEELVKIVTMHASKGLQYPLVYCPFVWDAADNTAGEWQIIHRQEGSELLAKTQLSE
NDLTQLGDEETAERLRLLYVALTRSEERLTIYAAAFGSSKGGHATTAGNTFAYLLEGGPDSLRSDVCKAYRDELSANKEA
GLTAMLRRNWQRFLDKQSADNTDFAFSDEAPPQSSFQTASNGSPKYRAWQPPQRYFSFIRHTSFTGLARHSGAAAEPEET
ALPDLDETDLPPAADTDGYTDIHYFPHGAQAGLCLHEMLEHADFNRPAIEQSGKLQEILHRYRFDEAWLPVMADLIDACR
QTPLTAGFALNDIAPKFRLPEMGFTMYMQQFSLKALQNWFAASDLPPECRQAAERLNFKDLQGYLNGFIDMVHQDPEGNV
CISDYKSNKLGNSSEAYTQTAMNAAMAEHHYYLQAFIYAIAVARYFKQRRQPLHEVNIRYIFLRGIGSPGKGIWSWNIPA
ESLREWL

Nucleotide


Download         Length: 3624 bp        

>NTDB_id=779990 PJU73_RS03910 WP_237091979.1 876183..879806(+) (recB) [Neisseria lisongii strain ZJ106]
ATGACTTCTTCCTCCGCCCGCACCTTCGACCCGCTCGCGATTCCGATTGAAAGCAGCAATCTGATTGAGGCCTCTGCCGG
TACCGGCAAAACCTACGGCATTGCCGCTCTGTTTACCCGCCTGATTCTGCTGGAGCAGCTCGCCGTTGATCGGATTTTGG
TGGTAACGTTTACCAAAGCCGCCACTGCCGAACTGAAAACCCGCCTGCGGGCGAGGTTGGACGAGGCCTTGCAGGTTTTG
GAACATGCGCCCGATGATGAGCCGTTTTCAGACGGCATCAGCGAATATTGTTGCCAACACCATGAAAACGATGAGTTTCT
GCCCGCCCTGCTGCTCAAGGCTTTGGAACAGGAAAGCCGCAACCGCCTGATTGTGCGCCTGAAAGCCGCCATCAGCCGGT
TTGACAATGCCGCCATTTACACGATACACGGTTTCTGCCAGCGGGTTTTGCGGGATTATGCTTTTTTGTGCCAATCGCCG
TTTGATGTGGCATTATCGGAAAACGATCAGCAGATCAAGCTGCAGGCGGCGCAGGATTTTTGGCGGCAAACCGTCAGCGG
TAATCGGGAACTTGCCGGATTGGTATTCAAACACCGCTGCACGCCGGAAAGCGTGTTGGCCGAAATCCAAAGCTATGCCG
CCCGCCCTTATCTTACGCCCAACCGACCCGAAAACCGGTTGAGTGAAACCCGTGCCGCTGCTGAATGCAACTGGCAAAAT
ATCCGGCAATCGCTGGCGGATTTAGAACAGACGTTTTGGCGCGTTCACGCTTCGCTCAACGGCAATGCCTACCGCAAGAA
TACGTTTGAAAAGGTATTCGCCCTGCTCGGGGAGGCTTCCGCAGCCGGCCGCCTGCCCGATGATGCTTATCTGCACGAAT
ATTTGCCCAAATTCGCTGCCGACCGTTTGGAGGAAAAAGTCAAAAAAGGCCAAAGCCCCGACCTTGCCGCCTTTGCCAAG
CTGCAAAGCCTTGCCAATCTGCAACGGGATTTGTCGGCAGTTGCCGAAGCCGAGCAAAACGCTTTAACTGCCCTCAAACT
CGATTTGCTCGAGTCGCTCAAAACGGCTTTGGCGGAACAGAAAAAATCCGGCCGCAGCCGCAGCTTCGATGATTTGCTGC
TGGATGTTTATCATGCTTTGGACGGACACAATCCGCACAGCGGGCAACTGGCGCACACCATCGCCCAAAACTGGCAAGTG
GCGCTGATTGACGAATTTCAGGATACTGATCCGCTGCAATACGCCGTGTTCAGCAAAATCTTTATCGGCTACCGCAACCC
GCTGTTTTTGGTGGGCGACCCGAAACAGGCGATTTACAGTTTTCGGGGTGCCGATATTTACGCCTACCTGCAGGCTGCGC
TCGATGCGGCGCATCACTACACGCTGGATACCAACTACCGCAGCCACAGCAAACTGATTGGCGGCATCAATGCGCTGTTC
CAACAAAAAAAACGCCCGTTTGTGCTGCCTAATATCGGTTATTCCGATGTTAAAGCCGCCCGTGCCGAAAGCCGCCTGTC
GCCGCCGCAGCCCGCCATTCAAATCCGCTGGCTCAACGGCAAAAACGATGAAGTTCTGCCCAAAGATGCGCTGCGTCAGC
GTGCCGCCGATTATTGCGCCAATGAAATCGCCTATGCCCTGAATGAAGCGGCGCAAGGCCGTCTGAAATTTAAAGAACGG
GCTGTCTGCTCGGGCGATATTGCGGTTTTGGTGCGCACCCATTCCGAAGGCAGCATGGTTGCCGAAGCGCTGAAAAAACG
GGGCGTGCGCAGCGTATTGAACGGGCGGCAGTCGGTATTTGCCGCCGATGAGGCCAAAAGCCTTGCCTCGCTGCTGGAAT
TTTTTCTCGATTCAAGAAAAACCGAAGCCTTGAGTTTTGTATTGGGCGGGCCGCTGTTCGGTTACACCGCCGAACAGCTA
TACCGGCTCAACCACAATGAAACCCTGATTCTGCAATGGATTGCCGCTGCCGAAGCTGCATTGGTGCAATGGCAGGAACA
GGGCATTTATGCTGCCATGCAGGGCTTTGCCGGTTTTTGCGGCTTGGAAACCTCGCTGCTGAAAAAACGCAACGAACGCA
GCCTGACCAATTACCACCAGCTTTTGGAGCGTTTGGCCGAAGAAGGCGAACACAACAGCCGCCCCGCCGCCCTGCACCAA
TGGCTGTTGGACCAAATTACCCAAGCCGCCGAAGGGCAAGTCGGAGACAACAATATCCTGCGTTTGGAAAGCGATGAAGA
ACTGGTTAAAATCGTTACCATGCACGCTTCCAAAGGATTGCAGTATCCATTGGTATATTGCCCTTTCGTGTGGGATGCGG
CCGACAACACAGCCGGCGAATGGCAGATTATCCACCGCCAAGAAGGCAGCGAACTGCTTGCCAAAACCCAATTATCGGAA
AACGATCTGACCCAGCTTGGCGACGAAGAAACCGCAGAACGCCTGCGCCTGCTGTATGTCGCCCTGACCCGTTCCGAAGA
GCGGCTCACAATCTATGCCGCCGCTTTCGGCAGCAGCAAAGGCGGCCATGCCACCACAGCCGGCAATACTTTCGCCTATC
TGCTCGAAGGCGGCCCCGACAGCCTGCGCAGCGATGTATGCAAAGCCTATCGGGACGAATTGTCTGCCAACAAAGAAGCC
GGTTTAACCGCCATGCTGCGGCGCAACTGGCAGCGTTTTTTAGACAAGCAATCAGCCGATAACACCGATTTTGCATTTAG
CGATGAAGCCCCGCCGCAAAGCAGTTTTCAGACGGCCTCAAACGGCTCACCCAAATATCGGGCATGGCAGCCGCCGCAAC
GCTATTTCTCCTTTATCCGCCATACCAGCTTTACCGGCTTGGCCCGACACAGCGGCGCAGCCGCCGAACCGGAAGAAACC
GCTTTGCCCGATTTGGACGAAACCGACCTGCCGCCTGCCGCCGATACCGACGGATACACCGACATCCACTATTTCCCGCA
CGGCGCACAAGCCGGCCTCTGTCTGCATGAAATGCTCGAACATGCCGACTTCAACCGCCCTGCAATTGAACAAAGCGGCA
AACTGCAAGAAATTCTGCACCGCTACCGTTTTGACGAAGCATGGCTGCCGGTGATGGCCGACTTAATCGATGCCTGCCGC
CAAACGCCGCTCACCGCAGGTTTTGCCTTAAACGACATCGCCCCCAAATTCCGCCTGCCCGAAATGGGTTTCACCATGTA
TATGCAGCAATTTTCCCTCAAAGCGCTGCAAAACTGGTTTGCCGCTTCCGACTTGCCGCCCGAATGCCGCCAAGCCGCCG
AACGTCTGAATTTCAAAGACTTGCAAGGCTATCTCAACGGCTTTATCGACATGGTACACCAAGACCCCGAAGGCAACGTG
TGCATCAGCGACTACAAATCCAACAAACTGGGCAACAGCAGCGAAGCCTACACCCAAACCGCCATGAACGCCGCCATGGC
CGAACACCATTATTATTTACAGGCCTTTATCTACGCCATCGCTGTCGCCCGCTATTTCAAACAACGCCGACAGCCGCTGC
ACGAAGTCAATATCCGCTACATCTTCCTGCGCGGCATCGGCAGCCCCGGCAAAGGCATCTGGTCGTGGAATATCCCAGCC
GAAAGCCTGCGGGAGTGGCTGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(693-833)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(16-453)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1089-1183)

UvrD-like helicase C-terminal domain (UvrD_C)

(460-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

57.67

100

0.582