Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   PJU73_RS00995 Genome accession   NZ_CP116766
Coordinates   203668..206895 (+) Length   1075 a.a.
NCBI ID   WP_237091031.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198668..211895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS00980 (PJU73_00980) - 198690..199241 (+) 552 WP_237091028.1 DNA-3-methyladenine glycosylase I -
  PJU73_RS00985 (PJU73_00985) - 199393..200547 (+) 1155 WP_237091029.1 MFS transporter -
  PJU73_RS00990 (PJU73_00990) gcvP 200665..203508 (+) 2844 WP_237091030.1 aminomethyl-transferring glycine dehydrogenase -
  PJU73_RS00995 (PJU73_00995) recC 203668..206895 (+) 3228 WP_237091031.1 exodeoxyribonuclease V subunit gamma Machinery gene
  PJU73_RS01000 (PJU73_01000) - 207239..207487 (-) 249 WP_237091032.1 DUF1289 domain-containing protein -
  PJU73_RS01005 (PJU73_01005) hemN 207730..209136 (-) 1407 WP_237091033.1 oxygen-independent coproporphyrinogen III oxidase -
  PJU73_RS01010 (PJU73_01010) fnr 209339..210073 (+) 735 WP_237091034.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  PJU73_RS01015 (PJU73_01015) - 210239..211189 (-) 951 WP_237091035.1 CysB family HTH-type transcriptional regulator -

Sequence

Protein


Download         Length: 1075 a.a.        Molecular weight: 121721.70 Da        Isoelectric Point: 4.8557

>NTDB_id=779984 PJU73_RS00995 WP_237091031.1 203668..206895(+) (recC) [Neisseria lisongii strain ZJ106]
MFYLYQSNRLESLAALFCRIQKINPLSDPWAEEEVVVQSQGMRRYLSACLARETGVAANLKFSLPAGLTWRLMRRVLLDI
PENSPFAPEVMRWRLVDLFRSDGFQTASEFALSRAALQSYLAGSESADYQLGGLLADIFDQYLVYRPQWIEAWRQGKLLD
LGGDEGWQAELWRYLDDGSQSALHRVALWAQLLQRLEQRHLPERLFVFGISTMAPMYLQLLQKIAEHCDVFMFALNPSAQ
YWGNVIEPAQILQGGDEADLTQSGHPLLASLGKQGRDFFDFLSEIEMETPVFESDDVEGAPGLLHRLQQDIQNLRMPSEN
REDNVGSLHDGSIQIVSAHSPLRELQILRDKLLKMLADHPDWQPHDIAVLTPDISPYTPFIEAVFGKAAGGGQPLPYSVS
DVKISRNQPLLTALAQLLACLEGRFEVDQVLALLDNRLVRERFELSQDDMPLLKDTAAQLNIHWGWDGSMRGGGDNLFTW
QQALERLVSGWLMPEGAAMWHNISAWHADINRLAVFARFTAFVRTLAEIYQAWQQPADTAVWVQRIRDTSAALFAPDKAD
QAALQQFEQALAAWQQDTDTAGFNGDLPLHTVIRHISRFLNSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGSFP
RNTRAAEFDLIARHPQKGDRARRDDDRYLFLEALISARDVLYLSYVGRNIRTDEALAPSPLLNELVDTVAAMTGVSGKNL
LENWIEQHPLQAFSHRYFAARPSENGVSAFISTRSDYAQALAQAPETAQPFWVEALNEAEPETIIAQHRLTAFWRNPLKY
WLQHNLAWREPYFDETLAAGEPFEPEHTEKIMDAYLEARRNRQDFAETAARLQAESLLPSGELGKLWQQDFQTLAKQIDG
ELLDSRLLPPQTYELTIGGATLHGSLSHLHQAGRIIFKNRNLSYPDKVAALLEHLLFCAVRPSETDSCRTYWVIGGETQI
LNDIPQQQASAFLESWVQYFQIGQQRPLPFFARLSWQTAEKYCKSESDWDTARQEAWTLYHGKKNQTAQKSYTEAALVFG
NDEQEPVETPLFRHLIEDMLAPAMAAAFGEEKAAE

Nucleotide


Download         Length: 3228 bp        

>NTDB_id=779984 PJU73_RS00995 WP_237091031.1 203668..206895(+) (recC) [Neisseria lisongii strain ZJ106]
ATGTTTTATCTGTATCAATCCAACCGTTTGGAATCGCTTGCGGCGCTGTTTTGCCGTATTCAGAAAATCAATCCGCTGTC
TGATCCGTGGGCGGAAGAGGAAGTGGTGGTGCAGAGTCAGGGCATGCGCCGTTATTTGAGCGCTTGTTTGGCAAGGGAAA
CGGGGGTGGCGGCGAATTTGAAATTCAGTTTGCCGGCGGGGCTGACGTGGCGGCTGATGCGGCGGGTGTTGCTGGATATT
CCGGAAAACAGTCCGTTTGCGCCGGAGGTGATGCGTTGGCGGCTGGTGGATTTGTTCCGCAGTGATGGTTTTCAGACGGC
CTCTGAATTTGCGCTCAGCCGTGCAGCGTTGCAGAGTTATCTTGCGGGCAGCGAGTCGGCGGATTATCAGTTGGGCGGGC
TGCTGGCGGATATTTTCGACCAGTATTTGGTGTACCGCCCGCAGTGGATTGAGGCGTGGCGGCAGGGGAAACTGCTGGAT
TTGGGCGGCGATGAGGGCTGGCAGGCGGAGTTGTGGCGTTATCTTGACGACGGTTCGCAGTCGGCGCTGCACCGTGTGGC
GTTGTGGGCGCAGCTTTTGCAGCGGTTGGAACAACGGCATTTGCCCGAACGGCTGTTTGTGTTCGGGATTTCGACGATGG
CGCCGATGTATCTGCAGCTTTTGCAGAAGATTGCCGAACATTGTGATGTGTTTATGTTTGCCTTGAACCCGAGTGCGCAG
TATTGGGGCAATGTGATTGAACCGGCGCAGATTCTGCAGGGCGGCGACGAGGCGGATTTGACGCAGAGCGGCCACCCGCT
GCTGGCTTCGTTGGGCAAACAGGGGCGGGACTTTTTTGATTTTCTGTCGGAAATCGAGATGGAAACGCCGGTGTTTGAAA
GCGATGACGTTGAGGGTGCGCCCGGTCTGCTGCACCGTTTGCAGCAGGATATTCAGAATCTTCGGATGCCGTCTGAAAAT
CGTGAGGATAATGTCGGCAGTCTGCACGACGGTTCGATTCAGATTGTGTCGGCACACAGTCCGCTGCGGGAATTGCAGAT
TCTGCGGGATAAACTGTTGAAAATGCTTGCCGACCATCCGGATTGGCAGCCGCACGATATTGCGGTGCTGACACCCGACA
TCAGCCCGTACACGCCGTTTATCGAAGCAGTGTTCGGCAAGGCGGCGGGCGGCGGGCAGCCGTTGCCGTATTCTGTTTCC
GATGTCAAAATCAGCCGCAACCAGCCGTTGCTGACCGCATTGGCGCAACTGCTGGCATGTTTGGAAGGGCGGTTTGAAGT
CGATCAGGTGTTGGCTTTGCTGGACAACCGTTTGGTGCGGGAACGCTTTGAATTGTCGCAAGACGATATGCCGCTTTTGA
AAGATACGGCGGCGCAGCTCAATATCCATTGGGGCTGGGACGGCAGTATGCGTGGCGGAGGCGACAATCTGTTTACTTGG
CAGCAGGCGCTGGAACGTTTGGTGTCGGGCTGGCTGATGCCCGAAGGGGCGGCGATGTGGCACAACATCAGCGCATGGCA
TGCCGACATCAACCGGCTGGCGGTGTTTGCCCGTTTTACCGCATTTGTCCGCACGTTGGCGGAAATCTATCAGGCTTGGC
AGCAACCGGCCGATACGGCGGTTTGGGTGCAGCGTATCCGTGATACGTCGGCGGCGCTGTTTGCACCCGATAAAGCAGAT
CAGGCAGCATTGCAACAGTTTGAACAGGCGCTGGCGGCGTGGCAGCAGGATACCGATACCGCCGGTTTCAACGGAGATTT
GCCGCTGCATACCGTAATCCGCCACATCAGCCGTTTTCTCAACAGCGAAAGTCAGGCAGGCTTCCTGCGGGGCGGGATTA
CTTTTTGCAGCATGGTGCCGATGCGCAGCCTACCGTTTAAAGTGATTTGCCTGCTGGGACTGAACGACGGCAGTTTCCCC
CGCAATACCCGTGCCGCCGAATTCGACCTGATTGCCCGCCACCCGCAAAAAGGCGACCGCGCCCGCCGCGATGACGACCG
CTATCTGTTTTTAGAAGCCTTAATCAGCGCACGGGACGTGCTGTATCTGTCGTATGTCGGCCGCAATATCCGCACCGATG
AAGCACTTGCCCCCTCGCCGCTGCTCAACGAACTGGTCGATACCGTGGCCGCCATGACCGGCGTTTCCGGCAAAAACCTG
TTGGAAAACTGGATAGAGCAACACCCGTTGCAGGCGTTTTCGCACCGCTATTTTGCCGCAAGGCCGTCTGAAAACGGCGT
TTCCGCCTTTATCAGCACCCGCAGCGACTACGCCCAAGCCCTTGCCCAAGCACCTGAAACAGCGCAGCCGTTTTGGGTGG
AAGCATTAAACGAAGCCGAACCCGAAACCATCATCGCCCAACACCGTTTGACCGCATTCTGGCGCAATCCGCTGAAATAT
TGGCTGCAACACAATCTGGCGTGGCGGGAACCGTATTTTGACGAAACATTGGCTGCAGGCGAACCGTTTGAGCCGGAACA
TACCGAAAAAATCATGGACGCTTATCTCGAAGCCCGCCGCAACCGGCAGGATTTTGCCGAAACCGCCGCCCGCCTGCAGG
CCGAAAGCCTGTTGCCTTCGGGCGAACTCGGCAAATTGTGGCAGCAGGATTTCCAAACGCTCGCCAAACAAATCGACGGC
GAACTGCTCGACAGCCGCCTGTTACCGCCGCAAACCTATGAACTGACCATCGGCGGCGCAACGCTGCACGGCAGTCTCAG
CCATCTGCATCAGGCGGGCAGAATCATCTTTAAAAACCGCAATCTAAGCTATCCCGACAAAGTCGCCGCTTTGCTCGAAC
ATTTACTGTTTTGCGCCGTAAGACCGTCTGAAACCGACAGTTGCCGCACCTATTGGGTTATCGGCGGCGAAACCCAAATC
CTGAACGACATTCCGCAGCAGCAGGCATCGGCATTTCTGGAAAGCTGGGTGCAGTATTTCCAAATCGGGCAACAACGCCC
GCTACCGTTTTTCGCCCGCCTAAGCTGGCAGACGGCGGAAAAATACTGTAAATCCGAATCCGATTGGGATACCGCCCGTC
AAGAAGCATGGACGCTGTATCACGGCAAGAAAAACCAAACCGCCCAAAAAAGCTATACCGAAGCAGCGCTGGTGTTCGGC
AATGATGAACAAGAACCGGTGGAAACGCCGCTGTTCCGACATCTGATTGAAGATATGCTGGCACCGGCAATGGCAGCAGC
GTTTGGGGAAGAAAAAGCAGCGGAATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)

RecC C-terminal domain (RecC_C)

(785-1001)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

62.78

99.721

0.626