Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   QYT32_RS03215 Genome accession   NZ_CP129553
Coordinates   645850..647001 (-) Length   383 a.a.
NCBI ID   WP_123090106.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 704D     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 640850..652001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT32_RS03195 (QYT32_03195) - 641247..642044 (-) 798 WP_001222103.1 TIGR00282 family metallophosphoesterase -
  QYT32_RS03200 (QYT32_03200) - 642218..642433 (+) 216 WP_000026308.1 hypothetical protein -
  QYT32_RS03205 (QYT32_03205) rny 642729..644288 (-) 1560 WP_001050913.1 ribonuclease Y -
  QYT32_RS03210 (QYT32_03210) recA 644642..645685 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  QYT32_RS03215 (QYT32_03215) cinA 645850..647001 (-) 1152 WP_123090106.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  QYT32_RS03220 (QYT32_03220) pgsA 647226..647804 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QYT32_RS03225 (QYT32_03225) - 647838..648230 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  QYT32_RS03230 (QYT32_03230) - 648249..649076 (-) 828 WP_000214890.1 YmfK family protein -
  QYT32_RS03235 (QYT32_03235) ymfI 649181..649885 (-) 705 WP_000646219.1 elongation factor P 5-aminopentanone reductase -
  QYT32_RS03240 (QYT32_03240) yfmH 649885..651171 (-) 1287 WP_000664777.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43198.50 Da        Isoelectric Point: 6.0928

>NTDB_id=779960 QYT32_RS03215 WP_123090106.1 645850..647001(-) (cinA) [Staphylococcus aureus strain 704D]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMMNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=779960 QYT32_RS03215 WP_123090106.1 645850..647001(-) (cinA) [Staphylococcus aureus strain 704D]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTTC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGATGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433