Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PMJ88_RS26625 | Genome accession | NZ_CP116725 |
| Coordinates | 5671528..5672400 (+) | Length | 290 a.a. |
| NCBI ID | WP_015648060.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 2881 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5666528..5677400
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMJ88_RS26605 (PMJ88_26605) | - | 5666812..5667753 (-) | 942 | WP_228480041.1 | O-antigen ligase family protein | - |
| PMJ88_RS26610 (PMJ88_26610) | - | 5667911..5668375 (-) | 465 | WP_023129290.1 | pilin | - |
| PMJ88_RS26615 (PMJ88_26615) | pilB | 5668606..5670306 (+) | 1701 | WP_030048379.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PMJ88_RS26620 (PMJ88_26620) | pilC | 5670310..5671527 (+) | 1218 | WP_015648061.1 | type II secretion system F family protein | Machinery gene |
| PMJ88_RS26625 (PMJ88_26625) | pilD | 5671528..5672400 (+) | 873 | WP_015648060.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PMJ88_RS26630 (PMJ88_26630) | coaE | 5672397..5673008 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PMJ88_RS26635 (PMJ88_26635) | yacG | 5673005..5673205 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PMJ88_RS26640 (PMJ88_26640) | - | 5673242..5673451 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PMJ88_RS26645 (PMJ88_26645) | - | 5673557..5674246 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PMJ88_RS26650 (PMJ88_26650) | - | 5674243..5674713 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PMJ88_RS26655 (PMJ88_26655) | - | 5674710..5675135 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PMJ88_RS26660 (PMJ88_26660) | - | 5675268..5675897 (+) | 630 | WP_015648058.1 | DUF1780 domain-containing protein | - |
| PMJ88_RS26665 (PMJ88_26665) | - | 5675894..5676343 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PMJ88_RS26670 (PMJ88_26670) | - | 5676369..5676539 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31889.86 Da Isoelectric Point: 7.3454
>NTDB_id=779911 PMJ88_RS26625 WP_015648060.1 5671528..5672400(+) (pilD) [Pseudomonas aeruginosa strain 2881]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGNCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=779911 PMJ88_RS26625 WP_015648060.1 5671528..5672400(+) (pilD) [Pseudomonas aeruginosa strain 2881]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55 |
96.552 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
51.943 |
97.586 |
0.507 |
| pilD | Acinetobacter nosocomialis M2 |
50.177 |
97.586 |
0.49 |
| pilD | Acinetobacter baumannii D1279779 |
50.177 |
97.586 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
48.201 |
95.862 |
0.462 |