Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QY866_RS08340 Genome accession   NZ_CP129530
Coordinates   1663934..1664662 (-) Length   242 a.a.
NCBI ID   WP_011374338.1    Uniprot ID   Q38XZ6
Organism   Latilactobacillus sakei strain A1262     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658934..1669662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS08310 (QY866_08300) ytpR 1659470..1660099 (-) 630 WP_096585258.1 YtpR family tRNA-binding protein -
  QY866_RS08315 (QY866_08305) - 1660118..1660438 (-) 321 WP_011374343.1 thioredoxin family protein -
  QY866_RS08320 (QY866_08310) - 1660561..1660887 (+) 327 WP_011374342.1 hypothetical protein -
  QY866_RS08325 (QY866_08315) trmB 1660959..1661600 (-) 642 WP_011374341.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QY866_RS08330 (QY866_08320) - 1661805..1662599 (-) 795 WP_011374340.1 phosphotransferase family protein -
  QY866_RS08335 (QY866_08325) - 1662732..1663931 (-) 1200 WP_041820776.1 ABC transporter permease -
  QY866_RS08340 (QY866_08330) pptA 1663934..1664662 (-) 729 WP_011374338.1 ABC transporter ATP-binding protein Regulator
  QY866_RS08345 (QY866_08335) - 1664883..1665311 (+) 429 WP_011374337.1 HIT family protein -
  QY866_RS08350 (QY866_08340) - 1665314..1665640 (+) 327 WP_011374336.1 YtxH domain-containing protein -
  QY866_RS08355 (QY866_08345) - 1665806..1666714 (+) 909 WP_049762126.1 peptidylprolyl isomerase PrsA -
  QY866_RS08360 (QY866_08350) - 1666775..1667743 (-) 969 WP_011374334.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26944.29 Da        Isoelectric Point: 5.0678

>NTDB_id=779911 QY866_RS08340 WP_011374338.1 1663934..1664662(-) (pptA) [Latilactobacillus sakei strain A1262]
MSLEINQLTGGYAHVPVLQEVSFTVPNQQVVGLIGLNGAGKSTTIKHIIGLLMPQKGTITLNGVTLQSNPDQYRQSMAYV
PETPVLYPELTLREHLELAMMAYDLDFEKTWAKAMVLLKKFRLDNKLDWFPVHFSKGMRQKVMIVNAFMTDADLFIIDEP
FTGLDPLAIHDLLDIIADKKAAGAAILMSTHILATAQQYADSFVLLNQGKVRTTGTLEELKAEFNMADANLDDIYLQMTK
EG

Nucleotide


Download         Length: 729 bp        

>NTDB_id=779911 QY866_RS08340 WP_011374338.1 1663934..1664662(-) (pptA) [Latilactobacillus sakei strain A1262]
ATGAGTTTAGAAATTAACCAATTAACGGGTGGTTACGCCCACGTACCAGTGCTCCAAGAAGTAAGTTTTACGGTTCCCAA
TCAACAGGTTGTCGGCTTGATTGGCTTAAACGGGGCTGGTAAATCAACGACCATTAAACATATTATCGGATTATTAATGC
CGCAAAAGGGTACGATTACGCTTAATGGCGTCACGTTGCAATCTAATCCGGATCAATACCGCCAAAGTATGGCTTACGTG
CCGGAAACGCCAGTCCTTTATCCCGAGTTAACATTACGAGAACATCTGGAACTAGCGATGATGGCTTACGATTTAGATTT
CGAGAAGACTTGGGCCAAAGCGATGGTGTTATTGAAGAAGTTCCGACTCGACAATAAGCTGGACTGGTTCCCAGTTCATT
TTTCAAAAGGGATGCGTCAAAAAGTGATGATCGTCAACGCTTTTATGACTGACGCCGATTTATTCATCATTGATGAACCT
TTTACAGGTCTTGATCCACTCGCCATTCACGATTTATTGGACATTATTGCTGATAAAAAGGCGGCGGGGGCGGCTATTTT
GATGTCGACCCATATTTTGGCCACGGCGCAACAATACGCCGATTCTTTTGTCCTATTAAATCAAGGTAAGGTTCGAACAA
CTGGGACGCTTGAAGAACTGAAAGCAGAATTTAACATGGCAGATGCAAACTTAGATGATATCTATTTGCAAATGACGAAA
GAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38XZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.983

98.347

0.57
  pptA Streptococcus thermophilus LMD-9

56.723

98.347

0.558