Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QY866_RS08080 Genome accession   NZ_CP129530
Coordinates   1615133..1616836 (-) Length   567 a.a.
NCBI ID   WP_056948329.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1610133..1621836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS08055 (QY866_08045) coaBC 1612151..1613368 (-) 1218 WP_251945273.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  QY866_RS08060 (QY866_08050) rpoZ 1613457..1613714 (-) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  QY866_RS08065 (QY866_08055) gmk 1613719..1614330 (-) 612 WP_011374394.1 guanylate kinase -
  QY866_RS08070 (QY866_08060) - 1614403..1614627 (-) 225 WP_011374393.1 PC4/YdbC family ssDNA-binding protein -
  QY866_RS08075 (QY866_08065) - 1614751..1615074 (+) 324 WP_056948330.1 hypothetical protein -
  QY866_RS08080 (QY866_08070) recN 1615133..1616836 (-) 1704 WP_056948329.1 DNA repair protein RecN Machinery gene
  QY866_RS08085 (QY866_08075) argR 1616886..1617338 (-) 453 WP_025015872.1 arginine repressor -
  QY866_RS08090 (QY866_08080) - 1617418..1618248 (-) 831 WP_056948327.1 TlyA family RNA methyltransferase -
  QY866_RS08095 (QY866_08085) - 1618257..1619129 (-) 873 WP_011374388.1 polyprenyl synthetase family protein -
  QY866_RS08100 (QY866_08090) - 1619129..1619359 (-) 231 WP_011374387.1 exodeoxyribonuclease VII small subunit -
  QY866_RS08105 (QY866_08095) xseA 1619361..1620710 (-) 1350 WP_251908161.1 exodeoxyribonuclease VII large subunit -
  QY866_RS08110 (QY866_08100) folD 1620703..1621557 (-) 855 WP_162256146.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63180.18 Da        Isoelectric Point: 4.7021

>NTDB_id=779910 QY866_RS08080 WP_056948329.1 1615133..1616836(-) (recN) [Latilactobacillus sakei strain A1262]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTSPENATTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTATLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTALASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
MVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=779910 QY866_RS08080 WP_056948329.1 1615133..1616836(-) (recN) [Latilactobacillus sakei strain A1262]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACAGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTGCTCGCTGGTGGTCGAGGGTCACAGGATT
TTATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTTACATCACCCGAAAACGCCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
TGTTAATGGCCATCTGGTCAACACTGCGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAGCTTTGGCGAGTGCAAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAGAAGCAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGAATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCGATGAATCAGATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCTGATAATCTACAAACAGGCTATTACACACTGCAAGACAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCAATGCAGGCCACCGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCTGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ATGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGATAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTCGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCACAGGCAATCGCCAATAAAATT
AGCGAAATTGCCCAACATTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464