Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QY866_RS06670 Genome accession   NZ_CP129530
Coordinates   1337675..1338733 (-) Length   352 a.a.
NCBI ID   WP_011374669.1    Uniprot ID   Q38X12
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1332675..1343733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS06650 (QY866_06640) - 1333592..1334515 (+) 924 WP_011374673.1 manganese-dependent inorganic pyrophosphatase -
  QY866_RS06655 (QY866_06645) - 1334572..1334925 (+) 354 WP_056947626.1 hypothetical protein -
  QY866_RS06660 (QY866_06650) - 1335026..1336819 (+) 1794 WP_041821096.1 heavy metal translocating P-type ATPase -
  QY866_RS06665 (QY866_06655) thiT 1336859..1337461 (-) 603 WP_011374670.1 energy-coupled thiamine transporter ThiT -
  QY866_RS06670 (QY866_06660) xerS 1337675..1338733 (-) 1059 WP_011374669.1 tyrosine recombinase XerS Machinery gene
  QY866_RS06675 (QY866_06665) - 1339553..1340560 (-) 1008 WP_337457568.1 NADP-dependent oxidoreductase -
  QY866_RS06680 (QY866_06670) - 1340562..1341143 (-) 582 WP_011374667.1 TetR/AcrR family transcriptional regulator -
  QY866_RS06685 (QY866_06675) - 1341269..1342111 (-) 843 WP_337457570.1 DegV family protein -
  QY866_RS06690 (QY866_06680) - 1342140..1342778 (-) 639 WP_016265118.1 hemolysin III family protein -
  QY866_RS06695 (QY866_06685) - 1342939..1343439 (+) 501 WP_056947631.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40804.78 Da        Isoelectric Point: 9.2979

>NTDB_id=779897 QY866_RS06670 WP_011374669.1 1337675..1338733(-) (xerS) [Latilactobacillus sakei strain A1262]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKVNNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFITFMQVDYPSALSNRQLASYKQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=779897 QY866_RS06670 WP_011374669.1 1337675..1338733(-) (xerS) [Latilactobacillus sakei strain A1262]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGTAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCACTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCTGATGGCGAACCTTATTTTTACCGGAACGTCA
TGAAAAAAGTTAAACTCCTGAAATCTTCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGC
GATAAAAAACACGACTTCATTACCTTTATGCAAGTCGACTATCCCAGTGCGCTCTCTAATCGCCAACTCGCTTCTTATAA
GCAAAATTGTGAACGAGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(191-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.787

100

0.463