Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PMJ90_RS28510 Genome accession   NZ_CP116722
Coordinates   5979782..5980339 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2868     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5974782..5985339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMJ90_RS28490 (PMJ90_28490) pilR 5976058..5977395 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PMJ90_RS28495 (PMJ90_28495) thiO 5977441..5978535 (-) 1095 WP_023089635.1 glycine oxidase ThiO -
  PMJ90_RS28500 (PMJ90_28500) - 5978670..5979179 (+) 510 WP_003112829.1 GspH/FimT family pseudopilin -
  PMJ90_RS28505 (PMJ90_28505) - 5979285..5979791 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PMJ90_RS28510 (PMJ90_28510) pilV 5979782..5980339 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PMJ90_RS28515 (PMJ90_28515) pilW 5980336..5981160 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PMJ90_RS28520 (PMJ90_28520) pilX 5981157..5981744 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  PMJ90_RS28525 (PMJ90_28525) pilY1 5981756..5985247 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=779848 PMJ90_RS28510 WP_003119423.1 5979782..5980339(+) (pilV) [Pseudomonas aeruginosa strain 2868]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=779848 PMJ90_RS28510 WP_003119423.1 5979782..5980339(+) (pilV) [Pseudomonas aeruginosa strain 2868]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995