Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QY867_RS09965 Genome accession   NZ_CP129529
Coordinates   1954216..1955964 (-) Length   582 a.a.
NCBI ID   WP_056946992.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949216..1960964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS09945 (QY867_09930) - 1950373..1951842 (+) 1470 WP_337457384.1 ABC transporter permease -
  QY867_RS09950 (QY867_09935) - 1951858..1952519 (+) 662 Protein_1898 ABC transporter ATP-binding protein -
  QY867_RS09955 (QY867_09940) - 1952568..1953056 (+) 489 WP_056946989.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QY867_RS09960 (QY867_09945) - 1953100..1953753 (-) 654 WP_011375525.1 MIP family channel protein -
  QY867_RS09965 (QY867_09950) recQ 1954216..1955964 (-) 1749 WP_056946992.1 DNA helicase RecQ Machinery gene
  QY867_RS09970 (QY867_09955) - 1956076..1956636 (-) 561 WP_011375528.1 TMEM175 family protein -
  QY867_RS09975 (QY867_09960) - 1956748..1957521 (+) 774 WP_064485097.1 hypothetical protein -
  QY867_RS09980 (QY867_09965) - 1957539..1957745 (+) 207 WP_251944992.1 hypothetical protein -
  QY867_RS09985 (QY867_09970) - 1957761..1958051 (+) 291 Protein_1905 YbhB/YbcL family Raf kinase inhibitor-like protein -
  QY867_RS09990 (QY867_09975) - 1958167..1958358 (+) 192 WP_056946999.1 hypothetical protein -
  QY867_RS09995 (QY867_09980) - 1958595..1959134 (-) 540 WP_056947002.1 cysteine hydrolase family protein -
  QY867_RS10000 (QY867_09985) - 1959248..1959646 (+) 399 WP_056947005.1 AsnC family transcriptional regulator -
  QY867_RS10005 (QY867_09990) - 1959675..1960313 (-) 639 WP_307722584.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65766.41 Da        Isoelectric Point: 5.1646

>NTDB_id=779841 QY867_RS09965 WP_056946992.1 1954216..1955964(-) (recQ) [Latilactobacillus sakei strain A1291]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVTRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIMPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=779841 QY867_RS09965 WP_056946992.1 1954216..1955964(-) (recQ) [Latilactobacillus sakei strain A1291]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGACGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAATAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTTAA
ATTGCTTTATGTGTCGCCAGAACGGTTGGATTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTCGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTTCGACCTAGTTATCTACGCTTAACGGATACAATTAAA
AGCATGCGACAACAACCAACAATTGTCGCACTAACGGCGACTGCTACGTCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTGAAGACTGGTTTTTCACGGGAAAACCTGGCCTTTCAAGTGGTTAAAAATCAAAACAGTGATC
GCTACTTAATCGATTATTTAAAGGTTAATAAGCAAAAATCCGGCATCATCTATGCTAGTACACGTAAAGAAGTTGAACGG
CTCACGAAGCTGATCGAAAAAGCGAAACTGGCAGTCACAATGTATCATGGTGGCTTAAATGAAATGGTGCGCCGGCAAAA
TCAAGAGGATTTTCTCTACGATCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGATTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCTGGCCGTGATGGC
TTACCGAGTGAGGCCATCTTACTGTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTTGATACACGCGAATCACAAGAC
ATTACAATTGATGTTCAAAAGGTTTTATCGTGCATCAAGCGAATGGACGAACGCTTCGGTAAAGTAATGGTCGCGCAAGT
ATTGACAGGCTCTAAGAATCAGAAGATTATGCAGTTTCGCTTTGACGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTTAGTGGTTTGATTGATTATTTAGTCGCATCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAAATCACGTTAGCGGGCGTCAAGGTACTTAAGGGCCAAGAAAAAGTGACGCGTAAAATGGCCGCTAAGGTTCAAAA
AACATTGCCTGAGGACAATGAGTTATTCGAACGCTTACGCGAATTGCGCCGTGATTTAGCTGAAGAGCAGGGTGTACCGC
CGTTTGTAATCTTCTCAGATAAAACGTTGTATTCAATGTGTGAAATTATGCCAACCTCACTGACTGAAATGCTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATACGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(513-579)

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

RQC domain (RQC)

(396-506)

DEAD/DEAH box helicase (DEAD)

(19-180)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521