Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QY867_RS06430 Genome accession   NZ_CP129529
Coordinates   1274675..1275307 (+) Length   210 a.a.
NCBI ID   WP_011374620.1    Uniprot ID   Q38X61
Organism   Latilactobacillus sakei strain A1291     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269675..1280307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS06400 (QY867_06385) - 1270438..1270827 (+) 390 WP_011374625.1 DUF1398 domain-containing protein -
  QY867_RS06405 (QY867_06390) - 1270882..1271835 (-) 954 WP_011374624.1 phosphoglycerate dehydrogenase -
  QY867_RS06410 (QY867_06395) - 1271938..1273089 (-) 1152 WP_011374623.1 class I SAM-dependent RNA methyltransferase -
  QY867_RS06420 (QY867_06405) gpsB 1273579..1273959 (-) 381 WP_011374622.1 cell division regulator GpsB -
  QY867_RS06425 (QY867_06410) - 1274039..1274599 (-) 561 WP_016265078.1 DUF1273 domain-containing protein -
  QY867_RS06430 (QY867_06415) recU 1274675..1275307 (+) 633 WP_011374620.1 Holliday junction resolvase RecU Machinery gene
  QY867_RS06435 (QY867_06420) - 1275314..1277617 (+) 2304 WP_035146921.1 PBP1A family penicillin-binding protein -
  QY867_RS06440 (QY867_06425) nth 1277702..1278352 (-) 651 WP_341844091.1 endonuclease III -
  QY867_RS06445 (QY867_06430) - 1278376..1278999 (-) 624 WP_011374617.1 DnaD domain protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24128.39 Da        Isoelectric Point: 9.4518

>NTDB_id=779813 QY867_RS06430 WP_011374620.1 1274675..1275307(+) (recU) [Latilactobacillus sakei strain A1291]
MAFHYPNGQPYSNHETKQPKKQGRHTSPTTLYGKRGMSLEEEINDSNQYYRLRDAAVIYKKPTPIQIVKVDYPARSQAVI
KEAYFKQASTTDYNGIYQGHYVDFEAKETKNKTSFPFQNFHQHQIDHFRACLQQGGVCFVIMKFVPLQRLFVYPASLLIT
QWDNQATGGRKSIPLAAIVADGFEIQYQLNPSIPYLEAVDQLIARHHKGV

Nucleotide


Download         Length: 633 bp        

>NTDB_id=779813 QY867_RS06430 WP_011374620.1 1274675..1275307(+) (recU) [Latilactobacillus sakei strain A1291]
ATGGCCTTTCATTATCCAAACGGACAGCCCTACTCAAATCATGAAACAAAACAGCCTAAAAAGCAAGGGCGACATACTAG
TCCAACCACCTTATATGGTAAACGCGGTATGTCATTAGAAGAAGAGATCAACGATAGTAATCAATATTATCGACTACGTG
ATGCTGCGGTTATCTATAAGAAACCCACCCCTATTCAGATCGTTAAGGTTGATTATCCAGCACGTAGTCAAGCTGTTATT
AAGGAAGCCTACTTTAAGCAAGCTTCAACAACGGATTATAATGGCATCTATCAGGGGCACTATGTGGATTTTGAAGCGAA
GGAAACTAAGAATAAAACGTCATTTCCGTTCCAAAACTTTCACCAACATCAAATTGATCATTTTAGAGCTTGCTTACAAC
AAGGCGGGGTTTGTTTTGTGATTATGAAGTTCGTCCCACTGCAACGTTTATTTGTGTATCCGGCAAGCTTATTGATTACA
CAATGGGACAATCAAGCAACTGGTGGTCGGAAGTCAATTCCACTAGCGGCGATCGTTGCCGATGGGTTTGAAATTCAGTA
TCAATTAAACCCAAGTATTCCCTATTTAGAGGCCGTCGATCAATTAATCGCACGCCACCACAAAGGAGTTTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(35-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

94.762

0.467