Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QY867_RS03655 Genome accession   NZ_CP129529
Coordinates   736295..736420 (+) Length   41 a.a.
NCBI ID   WP_337457487.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 731295..741420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS03640 (QY867_03635) argS 733079..734770 (+) 1692 WP_076631897.1 arginine--tRNA ligase -
  QY867_RS03645 (QY867_03640) - 735033..735797 (+) 765 WP_076645734.1 alpha/beta fold hydrolase -
  QY867_RS03650 (QY867_03645) - 735922..736308 (+) 387 WP_076645736.1 GntR family transcriptional regulator -
  QY867_RS03655 (QY867_03650) pptA 736295..736420 (+) 126 WP_337457487.1 ATP-binding cassette domain-containing protein Regulator
  QY867_RS03660 (QY867_03655) - 736404..737012 (+) 609 WP_337457754.1 ATP-binding cassette domain-containing protein -
  QY867_RS03665 (QY867_03660) - 737066..738135 (+) 1070 WP_099769415.1 IS3-like element IS1520 family transposase -
  QY867_RS03670 (QY867_03665) - 738360..738509 (+) 150 WP_185920783.1 hypothetical protein -
  QY867_RS03675 (QY867_03670) - 738527..739684 (+) 1158 WP_099947428.1 hypothetical protein -
  QY867_RS03680 (QY867_03675) - 739860..741293 (-) 1434 WP_016265464.1 amino acid permease -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4550.25 Da        Isoelectric Point: 7.0080

>NTDB_id=779781 QY867_RS03655 WP_337457487.1 736295..736420(+) (pptA) [Latilactobacillus sakei strain A1291]
MLTINKLHKRIDQKSILEEISFEQEPGEILGLVGRNGAGKS

Nucleotide


Download         Length: 126 bp        

>NTDB_id=779781 QY867_RS03655 WP_337457487.1 736295..736420(+) (pptA) [Latilactobacillus sakei strain A1291]
ATGCTGACAATTAACAAGTTACATAAACGAATTGATCAAAAATCAATTCTAGAAGAGATTAGTTTTGAACAAGAACCGGG
GGAAATCTTGGGATTGGTCGGTCGTAACGGTGCCGGTAAGTCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

41.463

100

0.415
  pptA Streptococcus thermophilus LMD-9

41.463

100

0.415
  oppD Streptococcus mutans UA159

35.556

100

0.39