Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QY867_RS03350 Genome accession   NZ_CP129529
Coordinates   669186..669737 (+) Length   183 a.a.
NCBI ID   WP_341844106.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 664186..674737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS03325 (QY867_03325) - 665616..665858 (-) 243 WP_011375173.1 hypothetical protein -
  QY867_RS03330 (QY867_03330) - 665945..666415 (-) 471 WP_251944728.1 nucleoside 2-deoxyribosyltransferase -
  QY867_RS03335 (QY867_03335) - 666506..667012 (+) 507 WP_011375171.1 DUF805 domain-containing protein -
  QY867_RS03340 (QY867_03340) rlmD 667228..668619 (-) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  QY867_RS03345 (QY867_03345) - 669005..669184 (+) 180 WP_011375169.1 hypothetical protein -
  QY867_RS03350 (QY867_03350) recX 669186..669737 (+) 552 WP_341844106.1 RecX family transcriptional regulator Regulator
  QY867_RS03355 - 669748..669993 (+) 246 WP_341844107.1 RecX family transcriptional regulator -
  QY867_RS03360 (QY867_03355) mutY 669980..671083 (+) 1104 WP_251945360.1 A/G-specific adenine glycosylase -
  QY867_RS03365 (QY867_03360) - 671170..671706 (+) 537 WP_011375166.1 DUF402 domain-containing protein -
  QY867_RS03370 (QY867_03365) - 671775..673475 (-) 1701 WP_251944726.1 glycosyltransferase family 8 protein -
  QY867_RS03375 (QY867_03370) - 673626..674099 (-) 474 WP_035146355.1 hypothetical protein -
  QY867_RS03380 (QY867_03375) - 674175..674606 (-) 432 WP_011375163.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20961.61 Da        Isoelectric Point: 5.7025

>NTDB_id=779778 QY867_RS03350 WP_341844106.1 669186..669737(+) (recX) [Latilactobacillus sakei strain A1291]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKASEEVPPQFVLRTTTKD

Nucleotide


Download         Length: 552 bp        

>NTDB_id=779778 QY867_RS03350 WP_341844106.1 669186..669737(+) (recX) [Latilactobacillus sakei strain A1291]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGACGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACTAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCAGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

40.237

92.35

0.372