Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   QY867_RS01195 Genome accession   NZ_CP129529
Coordinates   239706..241829 (+) Length   707 a.a.
NCBI ID   WP_016264495.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 234706..246829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS01180 (QY867_01180) - 235155..236174 (+) 1020 WP_250790778.1 cation:proton antiporter -
  QY867_RS01185 (QY867_01185) - 236245..236730 (-) 486 WP_096585623.1 TetR/AcrR family transcriptional regulator -
  QY867_RS01190 (QY867_01190) - 236978..239425 (+) 2448 WP_341844097.1 hydrophobe/amphiphile efflux-3 (HAE3) family transporter -
  QY867_RS01195 (QY867_01195) clpE 239706..241829 (+) 2124 WP_016264495.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  QY867_RS01200 (QY867_01200) - 241864..242400 (+) 537 WP_056948692.1 DUF308 domain-containing protein -
  QY867_RS01205 (QY867_01205) - 242506..242976 (-) 471 Protein_233 IS30 family transposase -
  QY867_RS01210 (QY867_01210) - 243202..243786 (+) 585 WP_301207569.1 recombinase family protein -
  QY867_RS01215 (QY867_01215) - 243835..244074 (+) 240 WP_251945112.1 ATP-binding cassette domain-containing protein -
  QY867_RS01220 (QY867_01220) - 244071..244991 (-) 921 WP_337457325.1 IS30-like element ISLsa1 family transposase -
  QY867_RS01225 (QY867_01225) - 245107..245376 (+) 270 WP_011373926.1 MarR family transcriptional regulator -
  QY867_RS01230 (QY867_01230) - 245510..246166 (+) 657 WP_011373927.1 metalloregulator ArsR/SmtB family transcription factor -
  QY867_RS01235 (QY867_01235) trxA 246254..246571 (+) 318 WP_099947531.1 thioredoxin -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 78445.88 Da        Isoelectric Point: 4.7412

>NTDB_id=779769 QY867_RS01195 WP_016264495.1 239706..241829(+) (clpE) [Latilactobacillus sakei strain A1291]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=779769 QY867_RS01195 WP_016264495.1 239706..241829(+) (clpE) [Latilactobacillus sakei strain A1291]
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAATGGTGAACATGCTCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGAAACTTAACCCAGGAAGCACGGGATGGTTTATTAGATCCTGTCATTGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACCGCGGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCACTAGAAGCCGGGACACAATATCGGGGCTCGTTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGGATAGGTTCAACCGGTGGCGAAGATGGCGGCAAAGGGT
TAGCTGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATATCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTCAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCCGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCCGTAATGATTGCGACTGTTGATGATATTGCGCAATCTGTTGAAAGATTAACTGGGATTCCAGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGTCAACGGTTAAAAGACAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCACGCGCAATTCGCAGAAATCGGGCAGGTTTTTCTGAAGGTAACCAACCAATTGGCAGTTTCTTATTTG
TTGGTCCAACTGGGGTCGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAATAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCCGTTTCTAAATTGATAGGGACGACAGCCGGCTATGTTGGCTATGA
CGATAATTCCAATACCTTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACCAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)

AAA lid domain (AAA_lid_9)

(262-359)

AAA domain (Cdc48 subfamily) (AAA_2)

(446-605)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(613-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

49.214

89.958

0.443
  clpC Lactococcus lactis subsp. cremoris KW2

48.889

89.109

0.436
  clpE Streptococcus pneumoniae Rx1

47.504

87.836

0.417
  clpE Streptococcus pneumoniae D39

47.504

87.836

0.417
  clpE Streptococcus pneumoniae R6

47.504

87.836

0.417
  clpE Streptococcus pneumoniae TIGR4

47.343

87.836

0.416
  clpC Streptococcus pneumoniae Rx1

43.862

94.484

0.414
  clpC Streptococcus pneumoniae D39

43.862

94.484

0.414
  clpC Streptococcus pneumoniae TIGR4

44.154

91.938

0.406
  clpC Bacillus subtilis subsp. subtilis str. 168

45.032

88.26

0.397
  clpC Streptococcus thermophilus LMD-9

44.75

87.553

0.392
  clpC Streptococcus thermophilus LMG 18311

44.013

87.412

0.385
  clpC Streptococcus mutans UA159

43.851

87.412

0.383
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.64

87.977

0.366