Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QY867_RS00490 Genome accession   NZ_CP129529
Coordinates   101591..102397 (+) Length   268 a.a.
NCBI ID   WP_011373794.1    Uniprot ID   Q38ZJ7
Organism   Latilactobacillus sakei strain A1291     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 96591..107397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS00470 (QY867_00470) yycF 96788..97501 (+) 714 WP_011373790.1 response regulator YycF -
  QY867_RS00475 (QY867_00475) walK 97511..99409 (+) 1899 WP_341843972.1 cell wall metabolism sensor histidine kinase WalK -
  QY867_RS00480 (QY867_00480) yycH 99399..100730 (+) 1332 WP_099947173.1 two-component system activity regulator YycH -
  QY867_RS00485 (QY867_00485) - 100735..101556 (+) 822 WP_056946883.1 two-component system regulatory protein YycI -
  QY867_RS00490 (QY867_00490) vicX 101591..102397 (+) 807 WP_011373794.1 MBL fold metallo-hydrolase Regulator
  QY867_RS00495 (QY867_00495) htrA 102531..103799 (+) 1269 WP_056946885.1 trypsin-like peptidase domain-containing protein Regulator
  QY867_RS00500 (QY867_00500) rlmH 104335..104814 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QY867_RS00505 (QY867_00505) - 104943..105149 (+) 207 WP_056948562.1 hypothetical protein -
  QY867_RS00510 (QY867_00510) add 105329..106347 (-) 1019 Protein_94 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29709.33 Da        Isoelectric Point: 5.0105

>NTDB_id=779763 QY867_RS00490 WP_011373794.1 101591..102397(+) (vicX) [Latilactobacillus sakei strain A1291]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKEVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=779763 QY867_RS00490 WP_011373794.1 101591..102397(+) (vicX) [Latilactobacillus sakei strain A1291]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGATGCGGGGATGAGTGGCAAACGGGTTCAGGATTTAATGCATAGCATTGGTCGGGATTTAAAAG
AGGTTGATAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGCGGTGTTGGCGTCTTAGCCCGCCGTTACGGGATT
GATGTGTACGCCAATCAACCGACTTGGGATGCGATGGCGTCAATTATTGGCACCGTCCCTGATGAACATAAGCACGTCTT
TGAGATGGGCAAAACCAAAACACTCGGCGATATCGATGTTGAAAGTTATGGTGTGTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAACAACCGGGCCTTCGCAATCTTAACGGATACGGGGTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGGATGGGAAAATATCCGTGGTCGCT
TAAACAACGGATCCTTAGTGATACTGGACATCTGTCTAACGAAGATGGCGCTTCAGCCTTAATGGCTTTTATGGGGCAAC
AAACAAAACGCGTTTTCCTAGGCCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCGTCAATT
TTAGAACAACATGATTATGGTGTTGGCACGGACTTTGAAATTTTAGATACAGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.073

96.642

0.571