Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QYM42_RS10970 Genome accession   NZ_CP129526
Coordinates   2213145..2213915 (-) Length   256 a.a.
NCBI ID   WP_251899903.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2208145..2218915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS10945 (QYM42_10945) - 2209170..2209577 (+) 408 WP_251899900.1 hypothetical protein -
  QYM42_RS10950 (QYM42_10950) - 2209678..2209983 (+) 306 WP_021721760.1 bacteriocin immunity protein -
  QYM42_RS10955 (QYM42_10955) - 2210074..2211255 (+) 1182 WP_251899901.1 site-specific integrase -
  QYM42_RS10960 (QYM42_10960) - 2211468..2212094 (+) 627 WP_004254657.1 copper homeostasis protein CutC -
  QYM42_RS10965 (QYM42_10965) - 2212133..2213152 (-) 1020 WP_301675254.1 ABC transporter permease -
  QYM42_RS10970 (QYM42_10970) pptA 2213145..2213915 (-) 771 WP_251899903.1 ABC transporter ATP-binding protein Regulator
  QYM42_RS10975 (QYM42_10975) - 2213934..2215739 (-) 1806 WP_033900792.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  QYM42_RS10980 (QYM42_10980) - 2216018..2216419 (+) 402 WP_004254651.1 HIT family protein -
  QYM42_RS10985 (QYM42_10985) - 2216432..2216653 (+) 222 WP_010906257.1 hypothetical protein -
  QYM42_RS10990 (QYM42_10990) - 2216665..2217009 (-) 345 WP_004254648.1 hypothetical protein -
  QYM42_RS10995 (QYM42_10995) rplA 2217088..2217777 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  QYM42_RS11000 (QYM42_11000) rplK 2218115..2218540 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28444.97 Da        Isoelectric Point: 4.5320

>NTDB_id=779734 QYM42_RS10970 WP_251899903.1 2213145..2213915(-) (pptA) [Lactococcus lactis strain ZZ-2]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRKKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=779734 QYM42_RS10970 WP_251899903.1 2213145..2213915(-) (pptA) [Lactococcus lactis strain ZZ-2]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGTGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAAAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCTGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633