Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QYM42_RS09500 Genome accession   NZ_CP129526
Coordinates   1935385..1936056 (-) Length   223 a.a.
NCBI ID   WP_098384079.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930385..1941056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS09475 (QYM42_09475) pheA 1930690..1931529 (-) 840 WP_023188548.1 prephenate dehydratase -
  QYM42_RS09480 (QYM42_09480) - 1931531..1932019 (-) 489 WP_017864896.1 shikimate kinase -
  QYM42_RS09485 (QYM42_09485) aroA 1932043..1933335 (-) 1293 WP_023188546.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  QYM42_RS09490 (QYM42_09490) - 1933456..1934520 (-) 1065 WP_251899787.1 prephenate dehydrogenase -
  QYM42_RS09495 (QYM42_09495) - 1934523..1935398 (-) 876 WP_003132784.1 sensor histidine kinase -
  QYM42_RS09500 (QYM42_09500) braR 1935385..1936056 (-) 672 WP_098384079.1 response regulator transcription factor Regulator
  QYM42_RS09505 (QYM42_09505) - 1936059..1937123 (-) 1065 WP_251899788.1 VanZ family protein -
  QYM42_RS09510 (QYM42_09510) - 1937304..1939307 (-) 2004 WP_033899972.1 ABC transporter permease -
  QYM42_RS09515 (QYM42_09515) - 1939300..1940079 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  QYM42_RS09520 (QYM42_09520) - 1940094..1940237 (-) 144 WP_014570691.1 hypothetical protein -
  QYM42_RS09525 (QYM42_09525) - 1940268..1940627 (-) 360 WP_010906119.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25496.41 Da        Isoelectric Point: 4.8093

>NTDB_id=779722 QYM42_RS09500 WP_098384079.1 1935385..1936056(-) (braR) [Lactococcus lactis strain ZZ-2]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEVGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=779722 QYM42_RS09500 WP_098384079.1 1935385..1936056(-) (braR) [Lactococcus lactis strain ZZ-2]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACTAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAGTTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.991

99.552

0.408