Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QV376_RS14110 Genome accession   NZ_CP129523
Coordinates   2866791..2867420 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YJX     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861791..2872420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QV376_RS14095 helD 2862033..2864087 (-) 2055 WP_001295354.1 DNA helicase IV -
  QV376_RS14100 yccF 2864210..2864656 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QV376_RS14105 yccS 2864666..2866828 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QV376_RS14110 sxy/tfoX 2866791..2867420 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QV376_RS14115 sulA 2867639..2868148 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QV376_RS14120 ompA 2868505..2869545 (+) 1041 WP_000750416.1 porin OmpA -
  QV376_RS14125 matP 2869621..2870073 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QV376_RS14130 ycbZ 2870259..2872019 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=779631 QV376_RS14110 WP_000839153.1 2866791..2867420(-) (sxy/tfoX) [Escherichia coli strain YJX]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=779631 QV376_RS14110 WP_000839153.1 2866791..2867420(-) (sxy/tfoX) [Escherichia coli strain YJX]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1