Detailed information NTG0779538

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QY490_RS18805
• Genome accession: NZ_CP129520
• Coordinates: 4057924..4058928 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LG03
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4052924..4063928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY490_RS18790 (QY490_18790)	-	4053407..4054414 (+)	1008	WP_003113874.1	TolB family protein	-
QY490_RS18795 (QY490_18795)	mutS	4054540..4057107 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QY490_RS18800 (QY490_18800)	fdxA	4057174..4057497 (+)	324	WP_003092272.1	ferredoxin FdxA	-
QY490_RS18805 (QY490_18805)	rpoS	4057924..4058928 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QY490_RS18810 (QY490_18810)	-	4059033..4059926 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
QY490_RS18815 (QY490_18815)	-	4059972..4060607 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QY490_RS18820 (QY490_18820)	surE	4060640..4061389 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QY490_RS18825 (QY490_18825)	truD	4061377..4062444 (-)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
QY490_RS18830 (QY490_18830)	ispF	4062441..4062914 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QY490_RS18835 (QY490_18835)	fghA	4062985..4063836 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=779538 QY490_RS18805 WP_003113871.1 4057924..4058928(-) (rpoS) [Pseudomonas aeruginosa strain LG03]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=779538 QY490_RS18805 WP_003113871.1 4057924..4058928(-) (rpoS) [Pseudomonas aeruginosa strain LG03]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653