Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QY490_RS16310 Genome accession   NZ_CP129520
Coordinates   3524175..3524504 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain LG03     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519175..3529504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY490_RS16295 (QY490_16295) uvrB 3520562..3522574 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  QY490_RS16300 (QY490_16300) - 3522762..3523958 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  QY490_RS16310 (QY490_16310) comEA/comE1 3524175..3524504 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  QY490_RS16315 (QY490_16315) - 3524695..3526692 (-) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QY490_RS16320 (QY490_16320) - 3527257..3528364 (-) 1108 Protein_3221 IS3 family transposase -
  QY490_RS16325 (QY490_16325) - 3528442..3529461 (-) 1020 WP_003113413.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=779533 QY490_RS16310 WP_003104586.1 3524175..3524504(-) (comEA/comE1) [Pseudomonas aeruginosa strain LG03]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=779533 QY490_RS16310 WP_003104586.1 3524175..3524504(-) (comEA/comE1) [Pseudomonas aeruginosa strain LG03]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385