Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   M2084_RS04045 Genome accession   NZ_AP025662
Coordinates   839087..839563 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain TUM20902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834087..844563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2084_RS04010 (TUM20902_07780) kpsS 835687..836907 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  M2084_RS04015 (TUM20902_07790) - 836933..837163 (-) 231 Protein_791 hypothetical protein -
  M2084_RS04020 - 837269..837445 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  M2084_RS04025 (TUM20902_07800) - 837525..837892 (-) 368 Protein_793 DUF5983 family protein -
  M2084_RS04030 (TUM20902_07810) cbtA 837889..838266 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  M2084_RS04035 (TUM20902_07820) cbeA 838355..838723 (-) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  M2084_RS04040 (TUM20902_07830) - 838797..839018 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  M2084_RS04045 (TUM20902_07840) radC 839087..839563 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  M2084_RS04050 (TUM20902_07850) - 839579..840064 (-) 486 WP_000214310.1 antirestriction protein -
  M2084_RS04055 (TUM20902_07860) - 840156..840974 (-) 819 WP_001234593.1 DUF932 domain-containing protein -
  M2084_RS04060 - 841092..841263 (-) 172 Protein_800 DUF905 family protein -
  M2084_RS04065 (TUM20902_07870) - 841364..841819 (-) 456 WP_000581502.1 IrmA family protein -
  M2084_RS04070 - 841895..844410 (-) 2516 Protein_802 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=77936 M2084_RS04045 WP_001186725.1 839087..839563(-) (radC) [Escherichia coli strain TUM20902]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=77936 M2084_RS04045 WP_001186725.1 839087..839563(-) (radC) [Escherichia coli strain TUM20902]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment