Detailed information NTG0779336

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QY489_RS18805
• Genome accession: NZ_CP129518
• Coordinates: 4057890..4058894 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain TNP004
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4052890..4063894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY489_RS18790 (QY489_18790)	-	4053373..4054380 (+)	1008	WP_003113874.1	TolB family protein	-
QY489_RS18795 (QY489_18795)	mutS	4054506..4057073 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QY489_RS18800 (QY489_18800)	fdxA	4057140..4057463 (+)	324	WP_003092272.1	ferredoxin FdxA	-
QY489_RS18805 (QY489_18805)	rpoS	4057890..4058894 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QY489_RS18810 (QY489_18810)	-	4058999..4059892 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
QY489_RS18815 (QY489_18815)	-	4059938..4060573 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QY489_RS18820 (QY489_18820)	surE	4060606..4061355 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QY489_RS18825 (QY489_18825)	truD	4061343..4062410 (-)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
QY489_RS18830 (QY489_18830)	ispF	4062407..4062880 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QY489_RS18835 (QY489_18835)	fghA	4062951..4063802 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=779336 QY489_RS18805 WP_003113871.1 4057890..4058894(-) (rpoS) [Pseudomonas aeruginosa strain TNP004]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=779336 QY489_RS18805 WP_003113871.1 4057890..4058894(-) (rpoS) [Pseudomonas aeruginosa strain TNP004]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653