NTDB

Overview

Name	ceuB	Type	Machinery gene
Locus tag	POF60_RS05305	Genome accession	NZ_CP116705
Coordinates	1008663..1009625 (-)	Length	320 a.a.
NCBI ID	WP_000735583.1	Uniprot ID	-
Organism	Streptococcus agalactiae strain CNCTC 10/84 dCas9
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1003663..1014625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
POF60_RS05285 (POF60_05285)	dprA	1004863..1005705 (-)	843	WP_001015249.1	DNA-processing protein DprA	Machinery gene
POF60_RS05290 (POF60_05290)	-	1005844..1006872 (-)	1029	WP_000162771.1	siderophore ABC transporter substrate-binding protein	-
POF60_RS05295 (POF60_05295)	-	1006934..1007695 (-)	762	WP_000614750.1	ATP-binding cassette domain-containing protein	-
POF60_RS05300 (POF60_05300)	-	1007692..1008666 (-)	975	WP_000588581.1	iron chelate uptake ABC transporter family permease subunit	-
POF60_RS05305 (POF60_05305)	ceuB	1008663..1009625 (-)	963	WP_000735583.1	iron chelate uptake ABC transporter family permease subunit	Machinery gene
POF60_RS05310 (POF60_05310)	-	1009865..1010413 (-)	549	WP_000136503.1	sugar O-acetyltransferase	-
POF60_RS05315 (POF60_05315)	-	1010434..1011195 (-)	762	WP_000201090.1	ribonuclease HII	-
POF60_RS05320 (POF60_05320)	ylqF	1011182..1012033 (-)	852	WP_000201278.1	ribosome biogenesis GTPase YlqF	-
POF60_RS05325 (POF60_05325)	-	1012123..1013510 (-)	1388	Protein_970	site-specific integrase	-
POF60_RS05330 (POF60_05330)	-	1013602..1013820 (-)	219	WP_000696051.1	hypothetical protein	-
POF60_RS05335 (POF60_05335)	-	1014089..1014310 (-)	222	WP_000286238.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

Download Length: 320 a.a. Molecular weight: 34864.98 Da Isoelectric Point: 8.4842

                                >NTDB_id=779171 POF60_RS05305 WP_000735583.1 1008663..1009625(-) (ceuB) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]

MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS

PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH

FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII

IVGALPFLGLIVPNLISLTKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide

Download Length: 963 bp

                                >NTDB_id=779171 POF60_RS05305 WP_000735583.1 1008663..1009625(-) (ceuB) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]

ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA

ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA

TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA

CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT

TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA

AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT

TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA

CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA

AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT

ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCTTAACTAAAGGGGATCATATGTCCTCAAC

TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG

AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA

TGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ceuB	Campylobacter jejuni subsp. jejuni 81-176	48.276	99.688	0.481

Detailed information NTG0779171