Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   POF60_RS02830 Genome accession   NZ_CP116705
Coordinates   501392..502465 (+) Length   357 a.a.
NCBI ID   WP_000790651.1    Uniprot ID   A0AAW6XPT9
Organism   Streptococcus agalactiae strain CNCTC 10/84 dCas9     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 496392..507465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF60_RS02800 (POF60_02800) - 497282..498346 (+) 1065 WP_000021299.1 MmcQ/YjbR family DNA-binding protein -
  POF60_RS02805 (POF60_02805) asnA 498462..499454 (+) 993 WP_000748011.1 aspartate--ammonia ligase -
  POF60_RS02810 (POF60_02810) - 499499..499948 (-) 450 WP_000592257.1 hypothetical protein -
  POF60_RS02815 (POF60_02815) rsmD 500079..500618 (+) 540 WP_001266830.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  POF60_RS02820 (POF60_02820) - 500630..500920 (+) 291 WP_000384889.1 hypothetical protein -
  POF60_RS02825 (POF60_02825) coaD 500917..501402 (+) 486 WP_000161893.1 pantetheine-phosphate adenylyltransferase -
  POF60_RS02830 (POF60_02830) sepM 501392..502465 (+) 1074 WP_000790651.1 SepM family pheromone-processing serine protease Regulator
  POF60_RS02835 (POF60_02835) - 502540..503874 (+) 1335 WP_000137523.1 bifunctional metallophosphatase/5'-nucleotidase -
  POF60_RS02840 (POF60_02840) - 503944..504522 (+) 579 WP_001224500.1 YutD-like domain-containing protein -
  POF60_RS02845 (POF60_02845) rlmN 504573..505679 (+) 1107 WP_001124994.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  POF60_RS02850 (POF60_02850) - 505679..506194 (+) 516 WP_000919803.1 VanZ family protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 39131.31 Da        Isoelectric Point: 10.4286

>NTDB_id=779152 POF60_RS02830 WP_000790651.1 501392..502465(+) (sepM) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATP
AQVLYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESVYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHL
ADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEG
VGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKV
QTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=779152 POF60_RS02830 WP_000790651.1 501392..502465(+) (sepM) [Streptococcus agalactiae strain CNCTC 10/84 dCas9]
GTGAAGAATAAAGATCCAAAAAGAAAACATAAAAGTTTACTAGGTCTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTT
ATTGTTAGTATTAGCAAGCCTTGTGGTGAGGCTACCTTATTATTTGGAAATGCCAGGTGGAGCTTATGATATCCGTTCGG
TATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACAATTTTGTAGCGGTATCTGTCAGTCAAGCAACGCCA
GCTCAGGTTCTTTATGCTTGGTTAACTCCTTTTACAGAATTATCTAGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGA
CGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAAAATGAGTCCGTCTATCAAGCTTTAAAGTTAGCTAATA
AGCAAGTATCTCTTACTTATAAAGGAGTTTATGTGCTTAACTTAGCTAAAAATTCGACATTTAAAGATAGATTACATTTA
GCTGATACAGTCACAGGAGTTAATGGCAAAAGTTTCAAAAATTCTTCTCAACTTATCAAATATGTTGCAGCTCTTCATCT
AGGTGATAAAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAAAGAATCAGTTGGTAAAGTTATTAAACTATCAAACG
GTAAAAATGGTATTGGTATCGGTTTGACAGACCATACAGAAGTATCATCTGATGTTCCTGTGGACTTTAATACTGAAGGT
GTTGGAGGACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTACGACCAATTGGTTAAAGAAGATTTACGTAAAGGACG
TAAGATTGCAGGTACTGGTACTATTGAGCAAAATGGGCATGTTGGCGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAG
CGGCTAAAAAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGATCGATAAAAATGCTAAAAAAGGCAAAACAAAGGTT
CAGACGAACTATCAAGAGGCAAAGGCAGCAGCTAAGCGATTAGGTACGAAGATGAAAATTGTACCAGTTCAAAATGTTCA
GCAAGCTATTGATTATTTGAAAAAAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.027

94.958

0.655