Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QY486_RS22945 Genome accession   NZ_CP129496
Coordinates   4928040..4929533 (+) Length   497 a.a.
NCBI ID   WP_301423827.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CW41     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4923040..4934533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY486_RS22915 (QY486_22915) - 4923252..4924061 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  QY486_RS22920 (QY486_22920) kdsD 4924475..4925455 (+) 981 WP_003094347.1 arabinose-5-phosphate isomerase KdsD -
  QY486_RS22925 (QY486_22925) - 4925455..4925994 (+) 540 WP_003098849.1 HAD family hydrolase -
  QY486_RS22930 (QY486_22930) lptC 4926003..4926575 (+) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  QY486_RS22935 (QY486_22935) lptA 4926562..4927089 (+) 528 WP_023130254.1 lipopolysaccharide transport periplasmic protein LptA -
  QY486_RS22940 (QY486_22940) lptB 4927089..4927814 (+) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  QY486_RS22945 (QY486_22945) rpoN/rpoN1 4928040..4929533 (+) 1494 WP_301423827.1 RNA polymerase factor sigma-54 Machinery gene
  QY486_RS22950 (QY486_22950) raiA 4929611..4929919 (+) 309 WP_003094359.1 ribosome-associated translation inhibitor RaiA -
  QY486_RS22955 (QY486_22955) ptsN 4929933..4930397 (+) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QY486_RS22960 (QY486_22960) rapZ 4930399..4931259 (+) 861 WP_301423828.1 RNase adapter RapZ -
  QY486_RS22965 (QY486_22965) - 4931289..4931561 (+) 273 WP_003116217.1 HPr family phosphocarrier protein -
  QY486_RS22970 (QY486_22970) - 4931658..4932590 (-) 933 WP_003120918.1 ZIP family metal transporter -
  QY486_RS22975 (QY486_22975) - 4932609..4933220 (-) 612 WP_003098862.1 superoxide dismutase -
  QY486_RS22980 (QY486_22980) - 4933233..4933680 (-) 448 Protein_4544 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56064.25 Da        Isoelectric Point: 4.4327

>NTDB_id=779146 QY486_RS22945 WP_301423827.1 4928040..4929533(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain CW41]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSPTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=779146 QY486_RS22945 WP_301423827.1 4928040..4929533(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain CW41]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCGCGCCCCAGGAGAGCCCTCTCCAGGAA
AGCGCCACCCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCGCGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGATAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGAGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCATGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCTGAAGGCGGGGAATGCTCGCCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.457

100

0.475