Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QY486_RS17705 Genome accession   NZ_CP129496
Coordinates   3821305..3821901 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain CW41     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3816305..3826901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY486_RS17685 (QY486_17685) - 3816941..3818524 (+) 1584 WP_004342641.1 NAD(P)/FAD-dependent oxidoreductase -
  QY486_RS17690 (QY486_17690) - 3818521..3819408 (+) 888 WP_003103932.1 SDR family oxidoreductase -
  QY486_RS17695 (QY486_17695) - 3819482..3820021 (+) 540 WP_003103931.1 CbrC family protein -
  QY486_RS17700 (QY486_17700) - 3820034..3821182 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  QY486_RS17705 (QY486_17705) recR 3821305..3821901 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QY486_RS17710 (QY486_17710) - 3821980..3822306 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QY486_RS17715 (QY486_17715) dnaX 3822352..3824397 (-) 2046 WP_265305572.1 DNA polymerase III subunit gamma/tau -
  QY486_RS17720 (QY486_17720) - 3824434..3825300 (+) 867 WP_079387710.1 ABC transporter substrate-binding protein -
  QY486_RS17730 (QY486_17730) - 3825774..3826511 (-) 738 WP_023102251.1 abortive infection family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=779134 QY486_RS17705 WP_003087237.1 3821305..3821901(-) (recR) [Pseudomonas aeruginosa strain CW41]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=779134 QY486_RS17705 WP_003087237.1 3821305..3821901(-) (recR) [Pseudomonas aeruginosa strain CW41]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48