Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   G6L39_RS19135 Genome accession   NZ_CP116684
Coordinates   1104739..1104843 (+) Length   34 a.a.
NCBI ID   WP_272471087.1    Uniprot ID   -
Organism   Agrobacterium fabrum strain 2788     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1099739..1109843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L39_RS19120 (G6L39_019120) - 1100648..1102372 (+) 1725 WP_080813497.1 glycerol-3-phosphate dehydrogenase/oxidase -
  G6L39_RS19125 (G6L39_019125) - 1102375..1103217 (+) 843 WP_035215305.1 class I fructose-bisphosphate aldolase -
  G6L39_RS19130 (G6L39_019130) - 1103210..1104709 (+) 1500 WP_143242128.1 FGGY-family carbohydrate kinase -
  G6L39_RS19135 (G6L39_019135) pilJ 1104739..1104843 (+) 105 WP_272471087.1 methyl-accepting chemotaxis protein Machinery gene
  G6L39_RS19140 (G6L39_019140) - 1104965..1105945 (-) 981 WP_080813500.1 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase -
  G6L39_RS19145 (G6L39_019145) - 1106140..1106484 (+) 345 WP_080813502.1 hypothetical protein -
  G6L39_RS19150 (G6L39_019150) - 1106515..1107660 (-) 1146 WP_080813504.1 alpha-hydroxy acid oxidase -
  G6L39_RS19155 (G6L39_019155) - 1107769..1108782 (-) 1014 WP_080813506.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 34 a.a.        Molecular weight: 3460.96 Da        Isoelectric Point: 9.7608

>NTDB_id=779110 G6L39_RS19135 WP_272471087.1 1104739..1104843(+) (pilJ) [Agrobacterium fabrum strain 2788]
MIAFQRNLLALNARVETARVGEAGSGFAAVAQGA

Nucleotide


Download         Length: 105 bp        

>NTDB_id=779110 G6L39_RS19135 WP_272471087.1 1104739..1104843(+) (pilJ) [Agrobacterium fabrum strain 2788]
GTGATAGCCTTCCAGAGGAATTTGCTGGCGCTCAACGCTAGGGTAGAAACGGCGCGGGTCGGCGAGGCGGGCAGCGGTTT
TGCCGCCGTGGCGCAGGGGGCGTGA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(2-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

64.516

91.176

0.588