Detailed information NTG0779105

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QY486_RS06665
• Genome accession: NZ_CP129496
• Coordinates: 1432222..1433226 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CW41
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1427222..1438226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY486_RS06635 (QY486_06635)	fghA	1427314..1428165 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
QY486_RS06640 (QY486_06640)	ispF	1428236..1428709 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QY486_RS06645 (QY486_06645)	truD	1428706..1429773 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
QY486_RS06650 (QY486_06650)	surE	1429761..1430510 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
QY486_RS06655 (QY486_06655)	-	1430543..1431178 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QY486_RS06660 (QY486_06660)	-	1431224..1432117 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
QY486_RS06665 (QY486_06665)	rpoS	1432222..1433226 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QY486_RS06670 (QY486_06670)	fdxA	1433652..1433975 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QY486_RS06675 (QY486_06675)	mutS	1434042..1436609 (-)	2568	WP_301424223.1	DNA mismatch repair protein MutS	-
QY486_RS06680 (QY486_06680)	-	1436735..1437742 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=779105 QY486_RS06665 WP_003113871.1 1432222..1433226(+) (rpoS) [Pseudomonas aeruginosa strain CW41]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=779105 QY486_RS06665 WP_003113871.1 1432222..1433226(+) (rpoS) [Pseudomonas aeruginosa strain CW41]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAGGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653