Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QYN05_RS29220 Genome accession   NZ_CP129406
Coordinates   5599336..5599932 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain PA272     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5594336..5604932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS29195 - 5595276..5595653 (+) 378 WP_003083354.1 hypothetical protein -
  QYN05_RS29205 - 5595907..5596773 (-) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  QYN05_RS29210 dnaX 5596810..5598885 (+) 2076 WP_031628204.1 DNA polymerase III subunit gamma/tau -
  QYN05_RS29215 - 5598931..5599257 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QYN05_RS29220 recR 5599336..5599932 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QYN05_RS29225 - 5600055..5601203 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  QYN05_RS29230 - 5601216..5601755 (-) 540 WP_003103931.1 CbrC family protein -
  QYN05_RS29235 - 5601829..5602716 (-) 888 WP_016253606.1 SDR family oxidoreductase -
  QYN05_RS29240 - 5602713..5604296 (-) 1584 WP_073653032.1 NAD(P)/FAD-dependent oxidoreductase -
  QYN05_RS29245 - 5604419..5604538 (+) 120 Protein_5193 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=779077 QYN05_RS29220 WP_003087237.1 5599336..5599932(+) (recR) [Pseudomonas aeruginosa strain PA272]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=779077 QYN05_RS29220 WP_003087237.1 5599336..5599932(+) (recR) [Pseudomonas aeruginosa strain PA272]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48